Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4304 and Shewana3_4305 are separated by 842 nucleotides Shewana3_4305 and Shewana3_4306 are separated by 942 nucleotides
Shewana3_4304: Shewana3_4304 - hypothetical protein (RefSeq), at 191,151 to 191,600
_4304
Shewana3_4305: Shewana3_4305 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 192,443 to 193,609
_4305
Shewana3_4306: Shewana3_4306 - IS4 family transposase (RefSeq), at 194,552 to 195,232
_4306
Position (kb) 192
193
194 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 191.474 kb on + strand, within Shewana3_4304 at 191.530 kb on + strand, within Shewana3_4304 at 191.530 kb on + strand, within Shewana3_4304 at 191.530 kb on + strand, within Shewana3_4304 at 191.530 kb on + strand, within Shewana3_4304 at 191.538 kb on - strand, within Shewana3_4304 at 191.538 kb on - strand, within Shewana3_4304 at 191.538 kb on - strand, within Shewana3_4304 at 191.540 kb on + strand, within Shewana3_4304 at 191.549 kb on - strand, within Shewana3_4304 at 191.549 kb on - strand, within Shewana3_4304 at 191.549 kb on - strand, within Shewana3_4304 at 191.559 kb on - strand at 191.603 kb on + strand at 191.619 kb on - strand at 191.761 kb on + strand at 191.872 kb on + strand at 191.880 kb on - strand at 191.965 kb on + strand at 191.983 kb on + strand at 191.989 kb on - strand at 192.197 kb on + strand at 192.197 kb on + strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.212 kb on + strand at 192.212 kb on + strand at 192.215 kb on - strand at 192.215 kb on - strand at 192.220 kb on - strand at 192.220 kb on - strand at 192.222 kb on + strand at 192.223 kb on + strand at 192.230 kb on - strand at 192.230 kb on - strand at 192.231 kb on - strand at 192.231 kb on - strand at 192.237 kb on - strand at 192.237 kb on - strand at 192.268 kb on + strand at 192.273 kb on + strand at 192.307 kb on - strand at 192.316 kb on - strand at 192.320 kb on + strand at 192.320 kb on + strand at 192.323 kb on + strand at 192.326 kb on - strand at 192.328 kb on + strand at 192.328 kb on + strand at 192.328 kb on - strand at 192.328 kb on - strand at 192.328 kb on - strand at 192.328 kb on - strand at 192.330 kb on + strand at 192.330 kb on + strand at 192.330 kb on + strand at 192.330 kb on + strand at 192.330 kb on + strand at 192.330 kb on + strand at 192.330 kb on + strand at 192.336 kb on - strand at 192.336 kb on - strand at 192.336 kb on - strand at 192.338 kb on - strand at 192.338 kb on - strand at 192.346 kb on - strand at 192.400 kb on + strand at 192.405 kb on + strand at 192.405 kb on + strand at 192.405 kb on + strand at 192.418 kb on - strand at 192.418 kb on - strand at 192.423 kb on - strand at 192.428 kb on + strand at 192.499 kb on + strand at 192.499 kb on + strand at 192.500 kb on + strand at 192.500 kb on + strand at 192.514 kb on + strand at 192.514 kb on + strand at 192.519 kb on + strand at 192.522 kb on - strand at 192.522 kb on - strand at 192.522 kb on - strand at 192.527 kb on - strand at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.691 kb on - strand, within Shewana3_4305 at 192.691 kb on - strand, within Shewana3_4305 at 192.691 kb on - strand, within Shewana3_4305 at 192.691 kb on - strand, within Shewana3_4305 at 192.691 kb on - strand, within Shewana3_4305 at 192.691 kb on - strand, within Shewana3_4305 at 192.691 kb on - strand, within Shewana3_4305 at 192.696 kb on - strand, within Shewana3_4305 at 192.701 kb on - strand, within Shewana3_4305 at 192.770 kb on - strand, within Shewana3_4305 at 192.818 kb on + strand, within Shewana3_4305 at 192.826 kb on - strand, within Shewana3_4305 at 192.826 kb on - strand, within Shewana3_4305 at 192.826 kb on - strand, within Shewana3_4305 at 192.828 kb on + strand, within Shewana3_4305 at 192.831 kb on - strand, within Shewana3_4305 at 192.840 kb on + strand, within Shewana3_4305 at 192.840 kb on + strand, within Shewana3_4305 at 192.840 kb on + strand, within Shewana3_4305 at 192.840 kb on + strand, within Shewana3_4305 at 192.848 kb on - strand, within Shewana3_4305 at 192.848 kb on - strand, within Shewana3_4305 at 192.870 kb on - strand, within Shewana3_4305 at 192.873 kb on + strand, within Shewana3_4305 at 192.873 kb on + strand, within Shewana3_4305 at 192.873 kb on + strand, within Shewana3_4305 at 192.873 kb on + strand, within Shewana3_4305 at 192.873 kb on + strand, within Shewana3_4305 at 192.873 kb on + strand, within Shewana3_4305 at 192.877 kb on - strand, within Shewana3_4305 at 192.881 kb on - strand, within Shewana3_4305 at 192.881 kb on - strand, within Shewana3_4305 at 192.881 kb on - strand, within Shewana3_4305 at 192.882 kb on + strand, within Shewana3_4305 at 192.883 kb on + strand, within Shewana3_4305 at 192.883 kb on + strand, within Shewana3_4305 at 192.883 kb on + strand, within Shewana3_4305 at 192.883 kb on + strand, within Shewana3_4305 at 192.883 kb on + strand, within Shewana3_4305 at 192.890 kb on - strand, within Shewana3_4305 at 192.890 kb on - strand, within Shewana3_4305 at 192.890 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.896 kb on - strand, within Shewana3_4305 at 192.905 kb on - strand, within Shewana3_4305 at 192.905 kb on - strand, within Shewana3_4305 at 192.905 kb on - strand, within Shewana3_4305 at 192.929 kb on + strand, within Shewana3_4305 at 192.951 kb on - strand, within Shewana3_4305 at 193.128 kb on + strand, within Shewana3_4305 at 193.136 kb on - strand, within Shewana3_4305 at 193.144 kb on + strand, within Shewana3_4305 at 193.149 kb on - strand, within Shewana3_4305 at 193.159 kb on - strand, within Shewana3_4305 at 193.159 kb on - strand, within Shewana3_4305 at 193.269 kb on + strand, within Shewana3_4305 at 193.269 kb on + strand, within Shewana3_4305 at 193.269 kb on + strand, within Shewana3_4305 at 193.269 kb on + strand, within Shewana3_4305 at 193.277 kb on - strand, within Shewana3_4305 at 193.277 kb on - strand, within Shewana3_4305 at 193.277 kb on - strand, within Shewana3_4305 at 193.277 kb on - strand, within Shewana3_4305 at 193.282 kb on + strand, within Shewana3_4305 at 193.292 kb on + strand, within Shewana3_4305 at 193.360 kb on + strand, within Shewana3_4305 at 193.368 kb on - strand, within Shewana3_4305 at 193.370 kb on + strand, within Shewana3_4305 at 193.447 kb on - strand, within Shewana3_4305 at 193.457 kb on - strand, within Shewana3_4305 at 193.494 kb on - strand at 193.572 kb on - strand at 193.572 kb on - strand at 193.584 kb on - strand at 193.730 kb on + strand at 193.730 kb on + strand at 193.730 kb on + strand at 193.738 kb on - strand at 193.772 kb on + strand at 193.820 kb on + strand at 193.848 kb on - strand at 193.848 kb on - strand at 193.859 kb on + strand at 193.859 kb on + strand at 193.869 kb on - strand at 193.883 kb on - strand at 193.954 kb on + strand at 193.955 kb on + strand at 194.009 kb on - strand at 194.045 kb on + strand at 194.045 kb on + strand at 194.045 kb on + strand at 194.045 kb on + strand at 194.053 kb on - strand at 194.053 kb on - strand at 194.069 kb on + strand at 194.078 kb on - strand at 194.100 kb on - strand at 194.145 kb on - strand at 194.169 kb on + strand at 194.177 kb on - strand at 194.179 kb on + strand at 194.179 kb on + strand at 194.187 kb on - strand at 194.192 kb on - strand at 194.210 kb on - strand at 194.212 kb on - strand at 194.212 kb on - strand at 194.291 kb on + strand at 194.446 kb on + strand at 194.446 kb on - strand at 194.469 kb on - strand at 194.492 kb on + strand at 194.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 191,474 + Shewana3_4304 0.72 +0.7 191,530 + Shewana3_4304 0.84 +0.2 191,530 + Shewana3_4304 0.84 +0.0 191,530 + Shewana3_4304 0.84 -2.0 191,530 + Shewana3_4304 0.84 -1.7 191,538 - Shewana3_4304 0.86 +2.3 191,538 - Shewana3_4304 0.86 +0.2 191,538 - Shewana3_4304 0.86 -1.7 191,540 + Shewana3_4304 0.86 -1.7 191,549 - Shewana3_4304 0.88 +0.5 191,549 - Shewana3_4304 0.88 +0.0 191,549 - Shewana3_4304 0.88 +0.6 191,559 - +1.0 191,603 + -0.1 191,619 - +0.2 191,761 + +0.3 191,872 + +0.6 191,880 - +1.1 191,965 + -2.5 191,983 + -1.0 191,989 - +0.5 192,197 + +0.6 192,197 + -1.4 192,205 - +0.3 192,205 - +0.6 192,205 - +0.1 192,205 - +0.3 192,205 - -2.1 192,205 - -1.6 192,205 - -0.3 192,205 - +0.6 192,205 - +0.9 192,212 + -1.1 192,212 + -1.2 192,215 - +0.3 192,215 - +0.7 192,220 - -1.8 192,220 - -0.9 192,222 + -1.1 192,223 + +0.1 192,230 - +0.7 192,230 - +0.6 192,231 - +0.5 192,231 - +0.5 192,237 - -1.3 192,237 - +0.1 192,268 + -1.8 192,273 + +0.1 192,307 - -1.6 192,316 - +0.5 192,320 + +0.3 192,320 + -0.8 192,323 + +2.0 192,326 - +0.0 192,328 + +0.3 192,328 + +0.0 192,328 - +0.8 192,328 - -1.8 192,328 - +0.3 192,328 - +0.5 192,330 + -0.6 192,330 + +0.3 192,330 + -1.5 192,330 + -0.1 192,330 + +1.0 192,330 + +1.0 192,330 + -0.1 192,336 - -0.9 192,336 - +0.6 192,336 - -2.1 192,338 - -1.8 192,338 - -0.6 192,346 - +0.3 192,400 + +0.1 192,405 + +0.5 192,405 + -1.2 192,405 + +0.1 192,418 - -0.7 192,418 - -0.7 192,423 - -2.0 192,428 + +0.6 192,499 + +0.8 192,499 + -1.4 192,500 + -0.4 192,500 + +0.4 192,514 + +0.5 192,514 + -2.6 192,519 + -1.9 192,522 - +0.5 192,522 - -1.6 192,522 - +0.4 192,527 - +0.8 192,683 + Shewana3_4305 0.21 +0.8 192,683 + Shewana3_4305 0.21 +0.3 192,683 + Shewana3_4305 0.21 +0.7 192,683 + Shewana3_4305 0.21 +0.7 192,683 + Shewana3_4305 0.21 +0.3 192,683 + Shewana3_4305 0.21 -1.6 192,683 + Shewana3_4305 0.21 +0.4 192,683 + Shewana3_4305 0.21 +0.9 192,683 + Shewana3_4305 0.21 +0.8 192,683 + Shewana3_4305 0.21 -1.5 192,683 + Shewana3_4305 0.21 -1.5 192,691 - Shewana3_4305 0.21 +0.6 192,691 - Shewana3_4305 0.21 +0.9 192,691 - Shewana3_4305 0.21 -2.0 192,691 - Shewana3_4305 0.21 -1.7 192,691 - Shewana3_4305 0.21 +0.5 192,691 - Shewana3_4305 0.21 +0.6 192,691 - Shewana3_4305 0.21 -1.7 192,696 - Shewana3_4305 0.22 -0.6 192,701 - Shewana3_4305 0.22 +0.4 192,770 - Shewana3_4305 0.28 +0.3 192,818 + Shewana3_4305 0.32 +0.6 192,826 - Shewana3_4305 0.33 -0.5 192,826 - Shewana3_4305 0.33 +0.3 192,826 - Shewana3_4305 0.33 -1.7 192,828 + Shewana3_4305 0.33 -0.4 192,831 - Shewana3_4305 0.33 +0.3 192,840 + Shewana3_4305 0.34 +2.4 192,840 + Shewana3_4305 0.34 -0.4 192,840 + Shewana3_4305 0.34 -0.5 192,840 + Shewana3_4305 0.34 +0.0 192,848 - Shewana3_4305 0.35 +0.2 192,848 - Shewana3_4305 0.35 +0.2 192,870 - Shewana3_4305 0.37 -0.0 192,873 + Shewana3_4305 0.37 +0.7 192,873 + Shewana3_4305 0.37 +1.0 192,873 + Shewana3_4305 0.37 +0.4 192,873 + Shewana3_4305 0.37 -1.4 192,873 + Shewana3_4305 0.37 +0.4 192,873 + Shewana3_4305 0.37 -1.6 192,877 - Shewana3_4305 0.37 +0.7 192,881 - Shewana3_4305 0.38 -1.4 192,881 - Shewana3_4305 0.38 +0.2 192,881 - Shewana3_4305 0.38 -0.4 192,882 + Shewana3_4305 0.38 -0.1 192,883 + Shewana3_4305 0.38 -0.4 192,883 + Shewana3_4305 0.38 -1.2 192,883 + Shewana3_4305 0.38 -2.3 192,883 + Shewana3_4305 0.38 -0.6 192,883 + Shewana3_4305 0.38 -1.3 192,890 - Shewana3_4305 0.38 -1.8 192,890 - Shewana3_4305 0.38 +0.1 192,890 - Shewana3_4305 0.38 +0.6 192,891 - Shewana3_4305 0.38 +0.3 192,891 - Shewana3_4305 0.38 +0.3 192,891 - Shewana3_4305 0.38 -0.5 192,891 - Shewana3_4305 0.38 +0.1 192,891 - Shewana3_4305 0.38 -0.1 192,891 - Shewana3_4305 0.38 +0.3 192,891 - Shewana3_4305 0.38 -1.8 192,891 - Shewana3_4305 0.38 -1.7 192,896 - Shewana3_4305 0.39 -0.7 192,905 - Shewana3_4305 0.40 -0.4 192,905 - Shewana3_4305 0.40 +0.4 192,905 - Shewana3_4305 0.40 +0.7 192,929 + Shewana3_4305 0.42 +0.5 192,951 - Shewana3_4305 0.44 -2.1 193,128 + Shewana3_4305 0.59 -0.0 193,136 - Shewana3_4305 0.59 +0.5 193,144 + Shewana3_4305 0.60 +0.1 193,149 - Shewana3_4305 0.60 +0.3 193,159 - Shewana3_4305 0.61 -2.2 193,159 - Shewana3_4305 0.61 +0.8 193,269 + Shewana3_4305 0.71 -1.1 193,269 + Shewana3_4305 0.71 +0.2 193,269 + Shewana3_4305 0.71 +0.0 193,269 + Shewana3_4305 0.71 -0.3 193,277 - Shewana3_4305 0.71 -0.1 193,277 - Shewana3_4305 0.71 +0.3 193,277 - Shewana3_4305 0.71 +0.2 193,277 - Shewana3_4305 0.71 -1.7 193,282 + Shewana3_4305 0.72 -0.5 193,292 + Shewana3_4305 0.73 -0.4 193,360 + Shewana3_4305 0.79 -2.5 193,368 - Shewana3_4305 0.79 +0.4 193,370 + Shewana3_4305 0.79 -0.1 193,447 - Shewana3_4305 0.86 +0.9 193,457 - Shewana3_4305 0.87 +0.6 193,494 - -1.8 193,572 - +0.4 193,572 - -2.0 193,584 - -0.6 193,730 + -0.8 193,730 + -1.4 193,730 + -0.7 193,738 - +0.6 193,772 + +1.7 193,820 + +0.2 193,848 - +0.3 193,848 - +0.2 193,859 + +0.3 193,859 + -2.2 193,869 - -2.7 193,883 - +0.2 193,954 + -1.6 193,955 + -0.5 194,009 - -0.6 194,045 + +0.4 194,045 + +0.5 194,045 + -0.9 194,045 + +0.4 194,053 - -1.4 194,053 - +1.0 194,069 + +0.4 194,078 - -1.6 194,100 - +0.5 194,145 - -1.7 194,169 + +0.7 194,177 - -3.9 194,179 + -0.0 194,179 + -0.6 194,187 - +0.6 194,192 - -0.1 194,210 - -0.9 194,212 - +0.7 194,212 - +0.1 194,291 + +0.2 194,446 + -2.3 194,446 - -0.1 194,469 - -0.2 194,492 + -2.6 194,493 - +0.2
Or see this region's nucleotide sequence