Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4228 and Shewana3_4229 are separated by 72 nucleotides Shewana3_4229 and Shewana3_4230 are separated by 128 nucleotides Shewana3_4230 and Shewana3_4231 are separated by 203 nucleotides Shewana3_4231 and Shewana3_4232 are separated by 131 nucleotides
Shewana3_4228: Shewana3_4228 - hypothetical protein (RefSeq), at 102,690 to 103,265
_4228
Shewana3_4229: Shewana3_4229 - single-strand binding protein (RefSeq), at 103,338 to 103,865
_4229
Shewana3_4230: Shewana3_4230 - hypothetical protein (RefSeq), at 103,994 to 105,601
_4230
Shewana3_4231: Shewana3_4231 - hypothetical protein (RefSeq), at 105,805 to 106,092
_4231
Shewana3_4232: Shewana3_4232 - hypothetical protein (RefSeq), at 106,224 to 106,649
_4232
Position (kb) 103
104
105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 103.053 kb on + strand, within Shewana3_4228 at 103.053 kb on + strand, within Shewana3_4228 at 103.056 kb on - strand, within Shewana3_4228 at 103.148 kb on - strand, within Shewana3_4228 at 103.321 kb on + strand at 103.329 kb on - strand at 103.466 kb on - strand, within Shewana3_4229 at 103.632 kb on - strand, within Shewana3_4229 at 103.682 kb on + strand, within Shewana3_4229 at 103.859 kb on + strand at 103.866 kb on + strand at 103.867 kb on - strand at 103.912 kb on + strand at 103.925 kb on + strand at 104.223 kb on + strand, within Shewana3_4230 at 104.341 kb on - strand, within Shewana3_4230 at 104.343 kb on - strand, within Shewana3_4230 at 104.354 kb on - strand, within Shewana3_4230 at 104.413 kb on + strand, within Shewana3_4230 at 104.562 kb on - strand, within Shewana3_4230 at 104.620 kb on - strand, within Shewana3_4230 at 104.723 kb on + strand, within Shewana3_4230 at 104.974 kb on - strand, within Shewana3_4230 at 105.048 kb on - strand, within Shewana3_4230 at 105.048 kb on - strand, within Shewana3_4230 at 105.088 kb on - strand, within Shewana3_4230 at 105.150 kb on - strand, within Shewana3_4230 at 105.178 kb on + strand, within Shewana3_4230 at 105.623 kb on - strand at 105.628 kb on - strand at 105.691 kb on + strand at 105.708 kb on + strand at 105.795 kb on + strand at 105.802 kb on + strand at 105.808 kb on - strand at 105.888 kb on + strand, within Shewana3_4231 at 105.924 kb on + strand, within Shewana3_4231 at 106.291 kb on + strand, within Shewana3_4232 at 106.299 kb on - strand, within Shewana3_4232 at 106.351 kb on - strand, within Shewana3_4232
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 103,053 + Shewana3_4228 0.63 -3.5 103,053 + Shewana3_4228 0.63 -0.2 103,056 - Shewana3_4228 0.64 +0.4 103,148 - Shewana3_4228 0.80 +0.4 103,321 + +0.5 103,329 - +1.0 103,466 - Shewana3_4229 0.24 -2.1 103,632 - Shewana3_4229 0.56 +0.5 103,682 + Shewana3_4229 0.65 +0.1 103,859 + -0.7 103,866 + -2.0 103,867 - -2.7 103,912 + -0.5 103,925 + -1.4 104,223 + Shewana3_4230 0.14 -0.2 104,341 - Shewana3_4230 0.22 -1.2 104,343 - Shewana3_4230 0.22 -1.8 104,354 - Shewana3_4230 0.22 -3.1 104,413 + Shewana3_4230 0.26 -1.4 104,562 - Shewana3_4230 0.35 -2.0 104,620 - Shewana3_4230 0.39 -0.7 104,723 + Shewana3_4230 0.45 +0.5 104,974 - Shewana3_4230 0.61 -1.2 105,048 - Shewana3_4230 0.66 -0.8 105,048 - Shewana3_4230 0.66 -1.8 105,088 - Shewana3_4230 0.68 +0.5 105,150 - Shewana3_4230 0.72 +0.1 105,178 + Shewana3_4230 0.74 +0.8 105,623 - -0.2 105,628 - -2.6 105,691 + +0.5 105,708 + +0.3 105,795 + -0.1 105,802 + -1.9 105,808 - -1.3 105,888 + Shewana3_4231 0.29 +0.4 105,924 + Shewana3_4231 0.41 -2.2 106,291 + Shewana3_4232 0.16 +0.3 106,299 - Shewana3_4232 0.18 -1.3 106,351 - Shewana3_4232 0.30 +0.8
Or see this region's nucleotide sequence