Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4205

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4204 and Shewana3_4205 are separated by 151 nucleotidesShewana3_4205 and Shewana3_4206 are separated by 41 nucleotides Shewana3_4204: Shewana3_4204 - UvrD/REP helicase (RefSeq), at 68,453 to 70,252 _4204 Shewana3_4205: Shewana3_4205 - hypothetical protein (RefSeq), at 70,404 to 71,261 _4205 Shewana3_4206: Shewana3_4206 - hypothetical protein (RefSeq), at 71,303 to 75,577 _4206 Position (kb) 70 71 72Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 69.547 kb on - strand, within Shewana3_4204at 69.864 kb on - strand, within Shewana3_4204at 69.874 kb on + strand, within Shewana3_4204at 69.948 kb on - strand, within Shewana3_4204at 70.024 kb on - strand, within Shewana3_4204at 70.045 kb on + strand, within Shewana3_4204at 70.053 kb on - strand, within Shewana3_4204at 70.324 kb on - strandat 70.356 kb on + strandat 70.449 kb on + strandat 70.612 kb on - strand, within Shewana3_4205at 70.689 kb on + strand, within Shewana3_4205at 70.713 kb on - strand, within Shewana3_4205at 70.762 kb on - strand, within Shewana3_4205at 70.894 kb on - strand, within Shewana3_4205at 70.951 kb on + strand, within Shewana3_4205at 71.249 kb on + strandat 71.332 kb on + strandat 71.394 kb on - strandat 71.446 kb on - strandat 71.840 kb on + strand, within Shewana3_4206at 71.925 kb on - strand, within Shewana3_4206at 72.187 kb on - strand, within Shewana3_4206

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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69,547 - Shewana3_4204 0.61 +0.4
69,864 - Shewana3_4204 0.78 +0.3
69,874 + Shewana3_4204 0.79 +0.3
69,948 - Shewana3_4204 0.83 +1.0
70,024 - Shewana3_4204 0.87 -2.9
70,045 + Shewana3_4204 0.88 -4.2
70,053 - Shewana3_4204 0.89 +0.6
70,324 - +0.6
70,356 + +0.2
70,449 + +0.2
70,612 - Shewana3_4205 0.24 +0.1
70,689 + Shewana3_4205 0.33 -1.4
70,713 - Shewana3_4205 0.36 +0.4
70,762 - Shewana3_4205 0.42 -1.8
70,894 - Shewana3_4205 0.57 -0.6
70,951 + Shewana3_4205 0.64 -0.4
71,249 + +0.4
71,332 + +1.7
71,394 - -1.5
71,446 - +0.7
71,840 + Shewana3_4206 0.13 +0.5
71,925 - Shewana3_4206 0.15 +0.8
72,187 - Shewana3_4206 0.21 -0.5

Or see this region's nucleotide sequence