Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4204 and Shewana3_4205 are separated by 151 nucleotides Shewana3_4205 and Shewana3_4206 are separated by 41 nucleotides
Shewana3_4204: Shewana3_4204 - UvrD/REP helicase (RefSeq), at 68,453 to 70,252
_4204
Shewana3_4205: Shewana3_4205 - hypothetical protein (RefSeq), at 70,404 to 71,261
_4205
Shewana3_4206: Shewana3_4206 - hypothetical protein (RefSeq), at 71,303 to 75,577
_4206
Position (kb)
70
71
72 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 69.547 kb on - strand, within Shewana3_4204 at 69.864 kb on - strand, within Shewana3_4204 at 69.874 kb on + strand, within Shewana3_4204 at 69.948 kb on - strand, within Shewana3_4204 at 70.024 kb on - strand, within Shewana3_4204 at 70.045 kb on + strand, within Shewana3_4204 at 70.053 kb on - strand, within Shewana3_4204 at 70.324 kb on - strand at 70.356 kb on + strand at 70.449 kb on + strand at 70.612 kb on - strand, within Shewana3_4205 at 70.689 kb on + strand, within Shewana3_4205 at 70.713 kb on - strand, within Shewana3_4205 at 70.762 kb on - strand, within Shewana3_4205 at 70.894 kb on - strand, within Shewana3_4205 at 70.951 kb on + strand, within Shewana3_4205 at 71.249 kb on + strand at 71.332 kb on + strand at 71.394 kb on - strand at 71.446 kb on - strand at 71.840 kb on + strand, within Shewana3_4206 at 71.925 kb on - strand, within Shewana3_4206 at 72.187 kb on - strand, within Shewana3_4206
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 69,547 - Shewana3_4204 0.61 +0.4 69,864 - Shewana3_4204 0.78 +0.3 69,874 + Shewana3_4204 0.79 +0.3 69,948 - Shewana3_4204 0.83 +1.0 70,024 - Shewana3_4204 0.87 -2.9 70,045 + Shewana3_4204 0.88 -4.2 70,053 - Shewana3_4204 0.89 +0.6 70,324 - +0.6 70,356 + +0.2 70,449 + +0.2 70,612 - Shewana3_4205 0.24 +0.1 70,689 + Shewana3_4205 0.33 -1.4 70,713 - Shewana3_4205 0.36 +0.4 70,762 - Shewana3_4205 0.42 -1.8 70,894 - Shewana3_4205 0.57 -0.6 70,951 + Shewana3_4205 0.64 -0.4 71,249 + +0.4 71,332 + +1.7 71,394 - -1.5 71,446 - +0.7 71,840 + Shewana3_4206 0.13 +0.5 71,925 - Shewana3_4206 0.15 +0.8 72,187 - Shewana3_4206 0.21 -0.5
Or see this region's nucleotide sequence