Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3508 and Shew_3509 are separated by 192 nucleotides Shew_3509 and Shew_3510 overlap by 8 nucleotides Shew_3510 and Shew_3511 overlap by 23 nucleotides Shew_3511 and Shew_3512 are separated by 8 nucleotides Shew_3512 and Shew_3513 overlap by 1 nucleotides
Shew_3508: Shew_3508 - hypothetical protein (RefSeq), at 4,196,058 to 4,196,930
_3508
Shew_3509: Shew_3509 - hypothetical protein (RefSeq), at 4,197,123 to 4,197,857
_3509
Shew_3510: Shew_3510 - phospholipid/glycerol acyltransferase (RefSeq), at 4,197,850 to 4,198,671
_3510
Shew_3511: Shew_3511 - acyl carrier protein, putative (RefSeq), at 4,198,649 to 4,198,903
_3511
Shew_3512: Shew_3512 - acyl carrier protein (RefSeq), at 4,198,912 to 4,199,160
_3512
Shew_3513: Shew_3513 - hypothetical protein (RefSeq), at 4,199,160 to 4,199,708
_3513
Position (kb) 4197
4198
4199 Strain fitness (log2 ratio) -2
-1
0
1 at 4197.165 kb on + strand at 4197.372 kb on + strand, within Shew_3509 at 4197.443 kb on - strand, within Shew_3509 at 4197.450 kb on + strand, within Shew_3509 at 4197.855 kb on - strand at 4198.029 kb on - strand, within Shew_3510 at 4198.068 kb on + strand, within Shew_3510 at 4198.315 kb on + strand, within Shew_3510 at 4198.358 kb on + strand, within Shew_3510 at 4198.997 kb on + strand, within Shew_3512 at 4199.030 kb on + strand, within Shew_3512 at 4199.097 kb on + strand, within Shew_3512 at 4199.105 kb on - strand, within Shew_3512 at 4199.105 kb on - strand, within Shew_3512 at 4199.209 kb on - strand at 4199.290 kb on - strand, within Shew_3513 at 4199.596 kb on + strand, within Shew_3513
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 4,197,165 + +0.2 4,197,372 + Shew_3509 0.34 +0.3 4,197,443 - Shew_3509 0.44 -2.2 4,197,450 + Shew_3509 0.44 +0.4 4,197,855 - +0.2 4,198,029 - Shew_3510 0.22 -0.0 4,198,068 + Shew_3510 0.27 -0.1 4,198,315 + Shew_3510 0.57 +0.1 4,198,358 + Shew_3510 0.62 -1.4 4,198,997 + Shew_3512 0.34 +1.1 4,199,030 + Shew_3512 0.47 -0.5 4,199,097 + Shew_3512 0.74 -0.8 4,199,105 - Shew_3512 0.78 +0.1 4,199,105 - Shew_3512 0.78 -0.1 4,199,209 - +0.0 4,199,290 - Shew_3513 0.24 -0.1 4,199,596 + Shew_3513 0.79 +1.0
Or see this region's nucleotide sequence