Strain Fitness in Shewanella loihica PV-4 around Shew_2046

Experiment: a-Ketoglutaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2044 and Shew_2045 are separated by 102 nucleotidesShew_2045 and Shew_2046 are separated by 21 nucleotidesShew_2046 and Shew_2047 are separated by 9 nucleotidesShew_2047 and Shew_2048 are separated by 12 nucleotides Shew_2044: Shew_2044 - ecotin precursor (RefSeq), at 2,359,742 to 2,360,299 _2044 Shew_2045: Shew_2045 - keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq), at 2,360,402 to 2,361,043 _2045 Shew_2046: Shew_2046 - phosphogluconate dehydratase (RefSeq), at 2,361,065 to 2,362,891 _2046 Shew_2047: Shew_2047 - 6-phosphogluconolactonase (RefSeq), at 2,362,901 to 2,363,599 _2047 Shew_2048: Shew_2048 - glucose-6-phosphate 1-dehydrogenase (RefSeq), at 2,363,612 to 2,365,084 _2048 Position (kb) 2361 2362 2363Strain fitness (log2 ratio) -1 0 1at 2361.093 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
remove
2,361,093 - +0.6

Or see this region's nucleotide sequence