Strain Fitness in Shewanella loihica PV-4 around Shew_1883

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1882 and Shew_1883 are separated by 375 nucleotidesShew_1883 and Shew_1884 are separated by 464 nucleotides Shew_1882: Shew_1882 - metal dependent phosphohydrolase (RefSeq), at 2,165,827 to 2,167,113 _1882 Shew_1883: Shew_1883 - hypothetical protein (RefSeq), at 2,167,489 to 2,167,725 _1883 Shew_1884: Shew_1884 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 2,168,190 to 2,169,656 _1884 Position (kb) 2167 2168Strain fitness (log2 ratio) -1 0 1at 2167.401 kb on - strandat 2167.664 kb on + strand, within Shew_1883at 2167.708 kb on + strandat 2167.967 kb on - strandat 2168.097 kb on - strandat 2168.111 kb on + strandat 2168.116 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,167,401 - +0.4
2,167,664 + Shew_1883 0.74 +1.1
2,167,708 + +0.2
2,167,967 - -1.0
2,168,097 - +0.5
2,168,111 + -0.5
2,168,116 - +0.5

Or see this region's nucleotide sequence