Strain Fitness in Shewanella loihica PV-4 around Shew_1833

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1832 and Shew_1833 are separated by 47 nucleotidesShew_1833 and Shew_1834 are separated by 455 nucleotides Shew_1832: Shew_1832 - hypothetical protein (RefSeq), at 2,107,806 to 2,109,074 _1832 Shew_1833: Shew_1833 - putative serine protein kinase, PrkA (RefSeq), at 2,109,122 to 2,111,056 _1833 Shew_1834: Shew_1834 - superoxide dismutase (RefSeq), at 2,111,512 to 2,112,096 _1834 Position (kb) 2109 2110 2111 2112Strain fitness (log2 ratio) -2 -1 0 1at 2108.498 kb on - strand, within Shew_1832at 2108.777 kb on - strand, within Shew_1832at 2109.350 kb on - strand, within Shew_1833at 2109.647 kb on - strand, within Shew_1833at 2110.461 kb on + strand, within Shew_1833

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,108,498 - Shew_1832 0.55 +0.1
2,108,777 - Shew_1832 0.77 -0.5
2,109,350 - Shew_1833 0.12 +0.5
2,109,647 - Shew_1833 0.27 -2.7
2,110,461 + Shew_1833 0.69 -2.2

Or see this region's nucleotide sequence