Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1147 and Shew_1148 are separated by 260 nucleotides Shew_1148 and Shew_1149 are separated by 148 nucleotides Shew_1149 and Shew_1150 are separated by 85 nucleotides Shew_1150 and Shew_1151 are separated by 216 nucleotides
Shew_1147: Shew_1147 - hypothetical protein (RefSeq), at 1,322,126 to 1,322,689
_1147
Shew_1148: Shew_1148 - hypothetical protein (RefSeq), at 1,322,950 to 1,323,399
_1148
Shew_1149: Shew_1149 - LysR family transcriptional regulator (RefSeq), at 1,323,548 to 1,324,423
_1149
Shew_1150: Shew_1150 - transmembrane pair domain-containing protein (RefSeq), at 1,324,509 to 1,324,931
_1150
Shew_1151: Shew_1151 - OmpA/MotB domain-containing protein (RefSeq), at 1,325,148 to 1,325,852
_1151
Position (kb) 1323
1324
1325 Strain fitness (log2 ratio) -1
0
1 at 1322.607 kb on + strand, within Shew_1147 at 1322.615 kb on - strand, within Shew_1147 at 1322.956 kb on - strand at 1323.270 kb on + strand, within Shew_1148 at 1323.286 kb on + strand, within Shew_1148 at 1323.622 kb on + strand at 1323.901 kb on + strand, within Shew_1149 at 1323.909 kb on - strand, within Shew_1149 at 1324.564 kb on + strand, within Shew_1150 at 1324.570 kb on - strand, within Shew_1150 at 1324.572 kb on - strand, within Shew_1150 at 1324.648 kb on - strand, within Shew_1150 at 1324.768 kb on + strand, within Shew_1150 at 1324.925 kb on + strand at 1325.090 kb on + strand at 1325.105 kb on + strand at 1325.229 kb on + strand, within Shew_1151 at 1325.318 kb on + strand, within Shew_1151
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 1,322,607 + Shew_1147 0.85 -0.8 1,322,615 - Shew_1147 0.87 +0.3 1,322,956 - -0.3 1,323,270 + Shew_1148 0.71 +0.5 1,323,286 + Shew_1148 0.75 +0.6 1,323,622 + +0.1 1,323,901 + Shew_1149 0.40 +0.7 1,323,909 - Shew_1149 0.41 +1.0 1,324,564 + Shew_1150 0.13 +0.0 1,324,570 - Shew_1150 0.14 -0.6 1,324,572 - Shew_1150 0.15 +0.7 1,324,648 - Shew_1150 0.33 +0.3 1,324,768 + Shew_1150 0.61 -1.6 1,324,925 + +0.0 1,325,090 + +0.4 1,325,105 + -0.6 1,325,229 + Shew_1151 0.11 -0.1 1,325,318 + Shew_1151 0.24 -0.4
Or see this region's nucleotide sequence