Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0850 and Shew_0851 are separated by 347 nucleotides Shew_0851 and Shew_0852 are separated by 124 nucleotides Shew_0852 and Shew_0853 are separated by 399 nucleotides
Shew_0850: Shew_0850 - hypothetical protein (RefSeq), at 972,890 to 973,717
_0850
Shew_0851: Shew_0851 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 974,065 to 975,117
_0851
Shew_0852: Shew_0852 - hypothetical protein (RefSeq), at 975,242 to 975,418
_0852
Shew_0853: Shew_0853 - ABC transporter-related protein (RefSeq), at 975,818 to 977,593
_0853
Position (kb) 974
975
976 Strain fitness (log2 ratio) -2
-1
0
1 at 973.070 kb on - strand, within Shew_0850 at 973.086 kb on + strand, within Shew_0850 at 973.089 kb on - strand, within Shew_0850 at 973.387 kb on + strand, within Shew_0850 at 973.458 kb on + strand, within Shew_0850 at 973.544 kb on - strand, within Shew_0850 at 973.552 kb on - strand, within Shew_0850 at 973.744 kb on + strand at 973.780 kb on - strand at 973.788 kb on + strand at 973.882 kb on + strand at 974.019 kb on + strand at 974.020 kb on - strand at 974.020 kb on - strand at 974.020 kb on - strand at 974.020 kb on - strand at 974.112 kb on + strand at 974.124 kb on + strand at 974.246 kb on + strand, within Shew_0851 at 974.266 kb on - strand, within Shew_0851 at 974.266 kb on - strand, within Shew_0851 at 974.318 kb on - strand, within Shew_0851 at 974.373 kb on - strand, within Shew_0851 at 974.373 kb on - strand, within Shew_0851 at 974.375 kb on + strand, within Shew_0851 at 974.395 kb on - strand, within Shew_0851 at 974.438 kb on - strand, within Shew_0851 at 974.601 kb on + strand, within Shew_0851 at 974.601 kb on + strand, within Shew_0851 at 974.609 kb on - strand, within Shew_0851 at 974.609 kb on - strand, within Shew_0851 at 974.653 kb on + strand, within Shew_0851 at 974.713 kb on - strand, within Shew_0851 at 974.792 kb on - strand, within Shew_0851 at 974.831 kb on - strand, within Shew_0851 at 974.941 kb on - strand, within Shew_0851 at 975.038 kb on - strand at 975.157 kb on + strand at 975.230 kb on + strand at 975.349 kb on - strand, within Shew_0852 at 975.372 kb on - strand, within Shew_0852 at 975.400 kb on + strand, within Shew_0852 at 975.468 kb on + strand at 975.477 kb on - strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.486 kb on - strand at 975.486 kb on - strand at 975.662 kb on - strand at 975.734 kb on - strand at 975.996 kb on + strand, within Shew_0853 at 976.014 kb on - strand, within Shew_0853 at 976.062 kb on + strand, within Shew_0853 at 976.062 kb on + strand, within Shew_0853 at 976.070 kb on - strand, within Shew_0853 at 976.094 kb on - strand, within Shew_0853
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 973,070 - Shew_0850 0.22 -0.1 973,086 + Shew_0850 0.24 +0.0 973,089 - Shew_0850 0.24 -0.1 973,387 + Shew_0850 0.60 +0.3 973,458 + Shew_0850 0.69 -0.3 973,544 - Shew_0850 0.79 -0.0 973,552 - Shew_0850 0.80 +0.3 973,744 + -1.0 973,780 - +0.2 973,788 + +0.1 973,882 + +1.0 974,019 + -2.1 974,020 - -0.8 974,020 - -0.4 974,020 - -0.7 974,020 - -0.6 974,112 + -0.9 974,124 + -0.4 974,246 + Shew_0851 0.17 -1.2 974,266 - Shew_0851 0.19 -1.5 974,266 - Shew_0851 0.19 -0.4 974,318 - Shew_0851 0.24 -1.1 974,373 - Shew_0851 0.29 -0.8 974,373 - Shew_0851 0.29 -0.2 974,375 + Shew_0851 0.29 -1.3 974,395 - Shew_0851 0.31 -1.5 974,438 - Shew_0851 0.35 -0.7 974,601 + Shew_0851 0.51 -0.6 974,601 + Shew_0851 0.51 -1.3 974,609 - Shew_0851 0.52 -0.3 974,609 - Shew_0851 0.52 -1.4 974,653 + Shew_0851 0.56 -0.6 974,713 - Shew_0851 0.62 -2.1 974,792 - Shew_0851 0.69 -1.1 974,831 - Shew_0851 0.73 -1.2 974,941 - Shew_0851 0.83 -1.3 975,038 - -1.0 975,157 + +0.2 975,230 + -0.4 975,349 - Shew_0852 0.60 +0.5 975,372 - Shew_0852 0.73 -0.0 975,400 + Shew_0852 0.89 -0.9 975,468 + +0.3 975,477 - +0.5 975,478 + +1.3 975,478 + +0.7 975,478 + +0.8 975,478 + +0.3 975,478 + +0.3 975,478 + -0.2 975,486 - -0.7 975,486 - -0.1 975,662 - +0.2 975,734 - +0.2 975,996 + Shew_0853 0.10 +0.1 976,014 - Shew_0853 0.11 +0.4 976,062 + Shew_0853 0.14 -0.0 976,062 + Shew_0853 0.14 -0.2 976,070 - Shew_0853 0.14 -0.0 976,094 - Shew_0853 0.16 -0.5
Or see this region's nucleotide sequence