Strain Fitness in Shewanella loihica PV-4 around Shew_0754

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0753 and pgk are separated by 102 nucleotidespgk and Shew_0755 are separated by 153 nucleotides Shew_0753: Shew_0753 - erythrose 4-phosphate dehydrogenase (RefSeq), at 854,411 to 855,427 _0753 Shew_0754: pgk - phosphoglycerate kinase (RefSeq), at 855,530 to 856,705 pgk Shew_0755: Shew_0755 - fructose-1,6-bisphosphate aldolase (RefSeq), at 856,859 to 857,923 _0755 Position (kb) 855 856 857Strain fitness (log2 ratio) -3 -2 -1 0 1at 857.257 kb on + strand, within Shew_0755at 857.265 kb on - strand, within Shew_0755

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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857,257 + Shew_0755 0.37 -2.8
857,265 - Shew_0755 0.38 -2.4

Or see this region's nucleotide sequence