Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0209 and Shew_0210 overlap by 4 nucleotides Shew_0210 and Shew_0211 overlap by 4 nucleotides Shew_0211 and Shew_0212 are separated by 22 nucleotides
Shew_0209: Shew_0209 - fimbrial assembly family protein (RefSeq), at 224,781 to 225,362
_0209
Shew_0210: Shew_0210 - pilus assembly protein, PilO (RefSeq), at 225,359 to 225,982
_0210
Shew_0211: Shew_0211 - pilus assembly protein, PilQ (RefSeq), at 225,979 to 226,494
_0211
Shew_0212: Shew_0212 - type IV pilus secretin PilQ (RefSeq), at 226,517 to 228,568
_0212
Position (kb) 225
226
227 Strain fitness (log2 ratio) -1
0
1 at 225.076 kb on + strand, within Shew_0209 at 225.084 kb on - strand, within Shew_0209 at 225.424 kb on + strand, within Shew_0210 at 225.424 kb on + strand, within Shew_0210 at 225.432 kb on - strand, within Shew_0210 at 225.516 kb on - strand, within Shew_0210 at 225.516 kb on - strand, within Shew_0210 at 225.516 kb on - strand, within Shew_0210 at 225.702 kb on + strand, within Shew_0210 at 225.702 kb on + strand, within Shew_0210 at 225.702 kb on + strand, within Shew_0210 at 225.710 kb on - strand, within Shew_0210 at 225.710 kb on - strand, within Shew_0210 at 225.825 kb on - strand, within Shew_0210 at 225.837 kb on - strand, within Shew_0210 at 226.204 kb on + strand, within Shew_0211 at 226.271 kb on + strand, within Shew_0211 at 226.289 kb on - strand, within Shew_0211 at 226.380 kb on - strand, within Shew_0211 at 226.480 kb on - strand at 226.480 kb on - strand at 226.572 kb on - strand at 226.572 kb on - strand at 226.620 kb on - strand at 226.628 kb on + strand at 226.640 kb on + strand at 226.821 kb on + strand, within Shew_0212 at 226.824 kb on - strand, within Shew_0212 at 226.844 kb on - strand, within Shew_0212 at 226.854 kb on - strand, within Shew_0212 at 226.873 kb on + strand, within Shew_0212 at 226.916 kb on - strand, within Shew_0212 at 227.076 kb on + strand, within Shew_0212 at 227.096 kb on - strand, within Shew_0212 at 227.141 kb on + strand, within Shew_0212 at 227.141 kb on + strand, within Shew_0212 at 227.358 kb on - strand, within Shew_0212 at 227.423 kb on + strand, within Shew_0212
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 225,076 + Shew_0209 0.51 +0.1 225,084 - Shew_0209 0.52 +0.3 225,424 + Shew_0210 0.10 +0.1 225,424 + Shew_0210 0.10 -0.0 225,432 - Shew_0210 0.12 -0.1 225,516 - Shew_0210 0.25 +0.0 225,516 - Shew_0210 0.25 +0.1 225,516 - Shew_0210 0.25 -1.3 225,702 + Shew_0210 0.55 +0.8 225,702 + Shew_0210 0.55 +0.4 225,702 + Shew_0210 0.55 -1.7 225,710 - Shew_0210 0.56 +0.4 225,710 - Shew_0210 0.56 +0.5 225,825 - Shew_0210 0.75 +0.5 225,837 - Shew_0210 0.77 -0.2 226,204 + Shew_0211 0.44 +0.1 226,271 + Shew_0211 0.57 +1.1 226,289 - Shew_0211 0.60 +1.3 226,380 - Shew_0211 0.78 +0.4 226,480 - -0.1 226,480 - +0.4 226,572 - -0.6 226,572 - +1.5 226,620 - +0.8 226,628 + +1.0 226,640 + -0.0 226,821 + Shew_0212 0.15 -0.1 226,824 - Shew_0212 0.15 +0.4 226,844 - Shew_0212 0.16 +0.4 226,854 - Shew_0212 0.16 -0.5 226,873 + Shew_0212 0.17 -0.6 226,916 - Shew_0212 0.19 +1.5 227,076 + Shew_0212 0.27 -1.0 227,096 - Shew_0212 0.28 +0.2 227,141 + Shew_0212 0.30 +1.2 227,141 + Shew_0212 0.30 +1.1 227,358 - Shew_0212 0.41 +0.1 227,423 + Shew_0212 0.44 +0.1
Or see this region's nucleotide sequence