Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4204

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4203 and Dshi_4204 are separated by 66 nucleotidesDshi_4204 and Dshi_4205 overlap by 4 nucleotides Dshi_4203: Dshi_4203 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 50,499 to 51,551 _4203 Dshi_4204: Dshi_4204 - hypothetical protein (RefSeq), at 51,618 to 52,199 _4204 Dshi_4205: Dshi_4205 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 52,196 to 53,524 _4205 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2at 50.632 kb on - strand, within Dshi_4203at 50.639 kb on + strand, within Dshi_4203at 50.660 kb on + strand, within Dshi_4203at 50.678 kb on - strand, within Dshi_4203at 50.784 kb on + strand, within Dshi_4203at 50.846 kb on + strand, within Dshi_4203at 50.890 kb on - strand, within Dshi_4203at 50.896 kb on - strand, within Dshi_4203at 50.922 kb on - strand, within Dshi_4203at 51.164 kb on + strand, within Dshi_4203at 51.194 kb on + strand, within Dshi_4203at 51.196 kb on - strand, within Dshi_4203at 51.372 kb on - strand, within Dshi_4203at 51.374 kb on + strand, within Dshi_4203at 51.414 kb on + strand, within Dshi_4203at 52.064 kb on - strand, within Dshi_4204at 52.299 kb on + strandat 52.349 kb on - strand, within Dshi_4205at 52.414 kb on - strand, within Dshi_4205at 52.425 kb on - strand, within Dshi_4205at 52.573 kb on - strand, within Dshi_4205at 52.682 kb on - strand, within Dshi_4205

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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50,632 - Dshi_4203 0.13 +0.3
50,639 + Dshi_4203 0.13 +1.5
50,660 + Dshi_4203 0.15 -1.6
50,678 - Dshi_4203 0.17 -0.5
50,784 + Dshi_4203 0.27 -0.7
50,846 + Dshi_4203 0.33 +1.5
50,890 - Dshi_4203 0.37 +0.5
50,896 - Dshi_4203 0.38 -0.1
50,922 - Dshi_4203 0.40 +0.5
51,164 + Dshi_4203 0.63 +0.5
51,194 + Dshi_4203 0.66 +0.5
51,196 - Dshi_4203 0.66 +2.1
51,372 - Dshi_4203 0.83 +0.9
51,374 + Dshi_4203 0.83 -0.5
51,414 + Dshi_4203 0.87 +0.5
52,064 - Dshi_4204 0.77 -0.5
52,299 + +0.5
52,349 - Dshi_4205 0.12 -1.0
52,414 - Dshi_4205 0.16 -1.3
52,425 - Dshi_4205 0.17 -1.8
52,573 - Dshi_4205 0.28 -1.3
52,682 - Dshi_4205 0.37 +0.4

Or see this region's nucleotide sequence