Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3926 and Dshi_3927 are separated by 62 nucleotides Dshi_3927 and Dshi_3928 are separated by 166 nucleotides
Dshi_3926: Dshi_3926 - hypothetical protein (RefSeq), at 149,344 to 150,306
_3926
Dshi_3927: Dshi_3927 - hypothetical protein (RefSeq), at 150,369 to 150,764
_3927
Dshi_3928: Dshi_3928 - homocysteine S-methyltransferase (RefSeq), at 150,931 to 151,857
_3928
Position (kb) 150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 149.382 kb on - strand at 149.461 kb on + strand, within Dshi_3926 at 149.510 kb on + strand, within Dshi_3926 at 149.723 kb on + strand, within Dshi_3926 at 149.732 kb on - strand, within Dshi_3926 at 149.787 kb on - strand, within Dshi_3926 at 149.836 kb on - strand, within Dshi_3926 at 149.838 kb on + strand, within Dshi_3926 at 149.879 kb on + strand, within Dshi_3926 at 149.922 kb on - strand, within Dshi_3926 at 149.963 kb on + strand, within Dshi_3926 at 150.304 kb on + strand at 150.365 kb on - strand at 150.449 kb on - strand, within Dshi_3927 at 150.630 kb on - strand, within Dshi_3927 at 150.638 kb on + strand, within Dshi_3927 at 150.662 kb on + strand, within Dshi_3927 at 150.881 kb on + strand at 150.894 kb on - strand at 150.951 kb on - strand at 151.048 kb on + strand, within Dshi_3928 at 151.098 kb on - strand, within Dshi_3928 at 151.126 kb on - strand, within Dshi_3928 at 151.303 kb on - strand, within Dshi_3928 at 151.427 kb on - strand, within Dshi_3928 at 151.428 kb on - strand, within Dshi_3928 at 151.489 kb on + strand, within Dshi_3928 at 151.521 kb on + strand, within Dshi_3928 at 151.641 kb on - strand, within Dshi_3928 at 151.710 kb on + strand, within Dshi_3928 at 151.715 kb on + strand, within Dshi_3928 at 151.718 kb on - strand, within Dshi_3928 at 151.723 kb on - strand, within Dshi_3928
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 149,382 - +3.0 149,461 + Dshi_3926 0.12 +1.9 149,510 + Dshi_3926 0.17 +1.6 149,723 + Dshi_3926 0.39 -0.6 149,732 - Dshi_3926 0.40 -1.1 149,787 - Dshi_3926 0.46 +0.7 149,836 - Dshi_3926 0.51 -2.9 149,838 + Dshi_3926 0.51 +1.1 149,879 + Dshi_3926 0.56 -1.7 149,922 - Dshi_3926 0.60 +1.5 149,963 + Dshi_3926 0.64 +0.1 150,304 + -2.1 150,365 - -1.5 150,449 - Dshi_3927 0.20 -1.9 150,630 - Dshi_3927 0.66 -0.4 150,638 + Dshi_3927 0.68 -0.2 150,662 + Dshi_3927 0.74 +0.1 150,881 + +2.1 150,894 - -0.9 150,951 - +0.1 151,048 + Dshi_3928 0.13 -2.7 151,098 - Dshi_3928 0.18 +0.1 151,126 - Dshi_3928 0.21 -0.6 151,303 - Dshi_3928 0.40 +0.1 151,427 - Dshi_3928 0.54 +0.1 151,428 - Dshi_3928 0.54 +1.4 151,489 + Dshi_3928 0.60 -0.1 151,521 + Dshi_3928 0.64 -1.6 151,641 - Dshi_3928 0.77 -3.0 151,710 + Dshi_3928 0.84 -0.1 151,715 + Dshi_3928 0.85 +0.4 151,718 - Dshi_3928 0.85 +0.1 151,723 - Dshi_3928 0.85 -2.7
Or see this region's nucleotide sequence