Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3826 and Dshi_3827 are separated by 41 nucleotides Dshi_3827 and Dshi_3828 are separated by 37 nucleotides Dshi_3828 and Dshi_3829 are separated by 127 nucleotides
Dshi_3826: Dshi_3826 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq), at 32,430 to 34,451
_3826
Dshi_3827: Dshi_3827 - phenylacetic acid degradation protein paaN (RefSeq), at 34,493 to 36,529
_3827
Dshi_3828: Dshi_3828 - putative transcriptional regulator, PaaX family (RefSeq), at 36,567 to 37,361
_3828
Dshi_3829: Dshi_3829 - hypothetical protein (RefSeq), at 37,489 to 37,941
_3829
Position (kb) 34
35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 33.515 kb on + strand, within Dshi_3826 at 33.666 kb on + strand, within Dshi_3826 at 33.994 kb on - strand, within Dshi_3826 at 34.047 kb on + strand, within Dshi_3826 at 34.196 kb on - strand, within Dshi_3826 at 34.212 kb on + strand, within Dshi_3826 at 34.212 kb on + strand, within Dshi_3826 at 34.354 kb on + strand at 34.491 kb on + strand at 34.535 kb on - strand at 34.656 kb on + strand at 34.712 kb on + strand, within Dshi_3827 at 34.756 kb on - strand, within Dshi_3827 at 34.817 kb on + strand, within Dshi_3827 at 34.817 kb on + strand, within Dshi_3827 at 34.825 kb on - strand, within Dshi_3827 at 34.825 kb on - strand, within Dshi_3827 at 34.929 kb on - strand, within Dshi_3827 at 34.986 kb on - strand, within Dshi_3827 at 35.169 kb on + strand, within Dshi_3827 at 35.169 kb on + strand, within Dshi_3827 at 35.306 kb on + strand, within Dshi_3827 at 35.465 kb on - strand, within Dshi_3827 at 35.583 kb on - strand, within Dshi_3827 at 35.594 kb on - strand, within Dshi_3827 at 35.594 kb on - strand, within Dshi_3827 at 35.907 kb on + strand, within Dshi_3827 at 35.917 kb on + strand, within Dshi_3827 at 35.963 kb on - strand, within Dshi_3827 at 36.018 kb on + strand, within Dshi_3827 at 36.072 kb on + strand, within Dshi_3827 at 36.155 kb on + strand, within Dshi_3827 at 36.336 kb on - strand at 36.432 kb on - strand at 36.575 kb on - strand at 36.612 kb on + strand at 36.626 kb on + strand at 36.626 kb on + strand at 36.644 kb on - strand at 36.668 kb on + strand, within Dshi_3828 at 36.691 kb on - strand, within Dshi_3828 at 36.696 kb on - strand, within Dshi_3828 at 36.798 kb on + strand, within Dshi_3828 at 36.923 kb on + strand, within Dshi_3828 at 36.941 kb on - strand, within Dshi_3828 at 37.064 kb on - strand, within Dshi_3828 at 37.080 kb on + strand, within Dshi_3828 at 37.102 kb on + strand, within Dshi_3828 at 37.255 kb on + strand, within Dshi_3828 at 37.263 kb on - strand, within Dshi_3828 at 37.270 kb on + strand, within Dshi_3828 at 37.365 kb on - strand at 37.454 kb on - strand at 37.511 kb on + strand at 37.517 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 33,515 + Dshi_3826 0.54 +1.5 33,666 + Dshi_3826 0.61 +0.1 33,994 - Dshi_3826 0.77 +1.1 34,047 + Dshi_3826 0.80 +0.7 34,196 - Dshi_3826 0.87 -1.9 34,212 + Dshi_3826 0.88 +0.1 34,212 + Dshi_3826 0.88 -2.5 34,354 + -2.2 34,491 + -2.2 34,535 - -1.3 34,656 + +2.5 34,712 + Dshi_3827 0.11 -0.3 34,756 - Dshi_3827 0.13 +0.1 34,817 + Dshi_3827 0.16 +0.5 34,817 + Dshi_3827 0.16 +1.7 34,825 - Dshi_3827 0.16 -1.3 34,825 - Dshi_3827 0.16 +0.1 34,929 - Dshi_3827 0.21 -0.5 34,986 - Dshi_3827 0.24 -1.5 35,169 + Dshi_3827 0.33 -0.6 35,169 + Dshi_3827 0.33 +0.6 35,306 + Dshi_3827 0.40 -2.5 35,465 - Dshi_3827 0.48 -1.0 35,583 - Dshi_3827 0.54 -1.7 35,594 - Dshi_3827 0.54 +0.5 35,594 - Dshi_3827 0.54 -1.3 35,907 + Dshi_3827 0.69 +0.1 35,917 + Dshi_3827 0.70 -3.3 35,963 - Dshi_3827 0.72 +0.1 36,018 + Dshi_3827 0.75 +2.6 36,072 + Dshi_3827 0.78 -0.1 36,155 + Dshi_3827 0.82 +1.7 36,336 - +0.1 36,432 - -3.5 36,575 - -1.2 36,612 + -1.1 36,626 + +0.1 36,626 + +0.6 36,644 - +0.1 36,668 + Dshi_3828 0.13 -1.1 36,691 - Dshi_3828 0.16 +0.1 36,696 - Dshi_3828 0.16 +1.1 36,798 + Dshi_3828 0.29 -2.2 36,923 + Dshi_3828 0.45 -0.5 36,941 - Dshi_3828 0.47 -0.3 37,064 - Dshi_3828 0.63 +0.9 37,080 + Dshi_3828 0.65 +1.1 37,102 + Dshi_3828 0.67 -1.1 37,255 + Dshi_3828 0.87 -1.0 37,263 - Dshi_3828 0.88 -0.9 37,270 + Dshi_3828 0.88 -1.2 37,365 - +0.1 37,454 - +0.1 37,511 + +1.7 37,517 + -1.7
Or see this region's nucleotide sequence