Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3826

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3824 and Dshi_3825 are separated by 22 nucleotidesDshi_3825 and Dshi_3826 are separated by 212 nucleotidesDshi_3826 and Dshi_3827 are separated by 41 nucleotides Dshi_3824: Dshi_3824 - phenylacetate-CoA ligase (RefSeq), at 30,459 to 31,769 _3824 Dshi_3825: Dshi_3825 - phenylacetic acid degradation protein PaaD (RefSeq), at 31,792 to 32,217 _3825 Dshi_3826: Dshi_3826 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq), at 32,430 to 34,451 _3826 Dshi_3827: Dshi_3827 - phenylacetic acid degradation protein paaN (RefSeq), at 34,493 to 36,529 _3827 Position (kb) 32 33 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 31.446 kb on + strand, within Dshi_3824at 31.471 kb on - strand, within Dshi_3824at 31.482 kb on + strand, within Dshi_3824at 31.501 kb on - strand, within Dshi_3824at 31.698 kb on - strandat 31.747 kb on - strandat 31.773 kb on + strandat 31.784 kb on + strandat 31.810 kb on + strandat 31.858 kb on + strand, within Dshi_3825at 31.944 kb on + strand, within Dshi_3825at 31.995 kb on + strand, within Dshi_3825at 32.083 kb on - strand, within Dshi_3825at 32.094 kb on + strand, within Dshi_3825at 32.094 kb on + strand, within Dshi_3825at 32.094 kb on + strand, within Dshi_3825at 32.102 kb on - strand, within Dshi_3825at 32.148 kb on + strand, within Dshi_3825at 32.308 kb on + strandat 32.704 kb on + strand, within Dshi_3826at 32.721 kb on + strand, within Dshi_3826at 33.061 kb on + strand, within Dshi_3826at 33.124 kb on - strand, within Dshi_3826at 33.181 kb on - strand, within Dshi_3826at 33.257 kb on + strand, within Dshi_3826at 33.291 kb on + strand, within Dshi_3826at 33.342 kb on - strand, within Dshi_3826at 33.345 kb on + strand, within Dshi_3826at 33.472 kb on + strand, within Dshi_3826at 33.477 kb on + strand, within Dshi_3826at 33.478 kb on - strand, within Dshi_3826at 33.515 kb on + strand, within Dshi_3826at 33.666 kb on + strand, within Dshi_3826at 33.994 kb on - strand, within Dshi_3826at 34.047 kb on + strand, within Dshi_3826at 34.196 kb on - strand, within Dshi_3826at 34.212 kb on + strand, within Dshi_3826at 34.212 kb on + strand, within Dshi_3826at 34.354 kb on + strandat 34.491 kb on + strandat 34.535 kb on - strandat 34.656 kb on + strandat 34.712 kb on + strand, within Dshi_3827at 34.756 kb on - strand, within Dshi_3827at 34.817 kb on + strand, within Dshi_3827at 34.817 kb on + strand, within Dshi_3827at 34.825 kb on - strand, within Dshi_3827at 34.825 kb on - strand, within Dshi_3827at 34.929 kb on - strand, within Dshi_3827at 34.986 kb on - strand, within Dshi_3827at 35.169 kb on + strand, within Dshi_3827at 35.169 kb on + strand, within Dshi_3827at 35.306 kb on + strand, within Dshi_3827

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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31,446 + Dshi_3824 0.75 -1.2
31,471 - Dshi_3824 0.77 -1.7
31,482 + Dshi_3824 0.78 -1.5
31,501 - Dshi_3824 0.79 +0.1
31,698 - -0.6
31,747 - -0.7
31,773 + +0.4
31,784 + -2.5
31,810 + +2.3
31,858 + Dshi_3825 0.15 +0.1
31,944 + Dshi_3825 0.36 -1.5
31,995 + Dshi_3825 0.48 +0.1
32,083 - Dshi_3825 0.68 -3.1
32,094 + Dshi_3825 0.71 -1.7
32,094 + Dshi_3825 0.71 -0.7
32,094 + Dshi_3825 0.71 +0.1
32,102 - Dshi_3825 0.73 +0.1
32,148 + Dshi_3825 0.84 +2.5
32,308 + +3.3
32,704 + Dshi_3826 0.14 +0.1
32,721 + Dshi_3826 0.14 +0.1
33,061 + Dshi_3826 0.31 +2.9
33,124 - Dshi_3826 0.34 -2.2
33,181 - Dshi_3826 0.37 +0.1
33,257 + Dshi_3826 0.41 -0.9
33,291 + Dshi_3826 0.43 +0.1
33,342 - Dshi_3826 0.45 -0.9
33,345 + Dshi_3826 0.45 +1.1
33,472 + Dshi_3826 0.52 +1.1
33,477 + Dshi_3826 0.52 -3.1
33,478 - Dshi_3826 0.52 +0.1
33,515 + Dshi_3826 0.54 +1.5
33,666 + Dshi_3826 0.61 +0.1
33,994 - Dshi_3826 0.77 +1.1
34,047 + Dshi_3826 0.80 +0.7
34,196 - Dshi_3826 0.87 -1.9
34,212 + Dshi_3826 0.88 +0.1
34,212 + Dshi_3826 0.88 -2.5
34,354 + -2.2
34,491 + -2.2
34,535 - -1.3
34,656 + +2.5
34,712 + Dshi_3827 0.11 -0.3
34,756 - Dshi_3827 0.13 +0.1
34,817 + Dshi_3827 0.16 +0.5
34,817 + Dshi_3827 0.16 +1.7
34,825 - Dshi_3827 0.16 -1.3
34,825 - Dshi_3827 0.16 +0.1
34,929 - Dshi_3827 0.21 -0.5
34,986 - Dshi_3827 0.24 -1.5
35,169 + Dshi_3827 0.33 -0.6
35,169 + Dshi_3827 0.33 +0.6
35,306 + Dshi_3827 0.40 -2.5

Or see this region's nucleotide sequence