Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3824 and Dshi_3825 are separated by 22 nucleotides Dshi_3825 and Dshi_3826 are separated by 212 nucleotides
Dshi_3824: Dshi_3824 - phenylacetate-CoA ligase (RefSeq), at 30,459 to 31,769
_3824
Dshi_3825: Dshi_3825 - phenylacetic acid degradation protein PaaD (RefSeq), at 31,792 to 32,217
_3825
Dshi_3826: Dshi_3826 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq), at 32,430 to 34,451
_3826
Position (kb)
31
32
33 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 30.825 kb on + strand, within Dshi_3824 at 30.895 kb on - strand, within Dshi_3824 at 30.991 kb on + strand, within Dshi_3824 at 31.058 kb on - strand, within Dshi_3824 at 31.113 kb on - strand, within Dshi_3824 at 31.125 kb on - strand, within Dshi_3824 at 31.163 kb on - strand, within Dshi_3824 at 31.213 kb on - strand, within Dshi_3824 at 31.233 kb on + strand, within Dshi_3824 at 31.340 kb on + strand, within Dshi_3824 at 31.376 kb on + strand, within Dshi_3824 at 31.446 kb on + strand, within Dshi_3824 at 31.471 kb on - strand, within Dshi_3824 at 31.482 kb on + strand, within Dshi_3824 at 31.501 kb on - strand, within Dshi_3824 at 31.698 kb on - strand at 31.747 kb on - strand at 31.773 kb on + strand at 31.784 kb on + strand at 31.810 kb on + strand at 31.858 kb on + strand, within Dshi_3825 at 31.944 kb on + strand, within Dshi_3825 at 31.995 kb on + strand, within Dshi_3825 at 32.083 kb on - strand, within Dshi_3825 at 32.094 kb on + strand, within Dshi_3825 at 32.094 kb on + strand, within Dshi_3825 at 32.094 kb on + strand, within Dshi_3825 at 32.102 kb on - strand, within Dshi_3825 at 32.148 kb on + strand, within Dshi_3825 at 32.308 kb on + strand at 32.704 kb on + strand, within Dshi_3826 at 32.721 kb on + strand, within Dshi_3826 at 33.061 kb on + strand, within Dshi_3826 at 33.124 kb on - strand, within Dshi_3826 at 33.181 kb on - strand, within Dshi_3826
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 30,825 + Dshi_3824 0.28 -1.2 30,895 - Dshi_3824 0.33 -2.5 30,991 + Dshi_3824 0.41 -2.9 31,058 - Dshi_3824 0.46 -1.5 31,113 - Dshi_3824 0.50 -0.6 31,125 - Dshi_3824 0.51 -2.7 31,163 - Dshi_3824 0.54 -1.0 31,213 - Dshi_3824 0.58 +0.1 31,233 + Dshi_3824 0.59 -1.0 31,340 + Dshi_3824 0.67 +0.1 31,376 + Dshi_3824 0.70 -1.5 31,446 + Dshi_3824 0.75 -1.2 31,471 - Dshi_3824 0.77 -1.7 31,482 + Dshi_3824 0.78 -1.5 31,501 - Dshi_3824 0.79 +0.1 31,698 - -0.6 31,747 - -0.7 31,773 + +0.4 31,784 + -2.5 31,810 + +2.3 31,858 + Dshi_3825 0.15 +0.1 31,944 + Dshi_3825 0.36 -1.5 31,995 + Dshi_3825 0.48 +0.1 32,083 - Dshi_3825 0.68 -3.1 32,094 + Dshi_3825 0.71 -1.7 32,094 + Dshi_3825 0.71 -0.7 32,094 + Dshi_3825 0.71 +0.1 32,102 - Dshi_3825 0.73 +0.1 32,148 + Dshi_3825 0.84 +2.5 32,308 + +3.3 32,704 + Dshi_3826 0.14 +0.1 32,721 + Dshi_3826 0.14 +0.1 33,061 + Dshi_3826 0.31 +2.9 33,124 - Dshi_3826 0.34 -2.2 33,181 - Dshi_3826 0.37 +0.1
Or see this region's nucleotide sequence