Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3705

Experiment: m.b. Tetracycline 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_3703 and Dshi_3705 are separated by 59 nucleotidesDshi_3705 and Dshi_3706 overlap by 4 nucleotidesDshi_3706 and Dshi_3707 are separated by 11 nucleotidesDshi_3707 and Dshi_3708 are separated by 145 nucleotides Dshi_3703: Dshi_3703 - no description, at 110,976 to 112,111 _3703 Dshi_3705: Dshi_3705 - Integrase catalytic region (RefSeq), at 112,171 to 113,076 _3705 Dshi_3706: Dshi_3706 - transposase IS3/IS911 family protein (RefSeq), at 113,073 to 113,405 _3706 Dshi_3707: Dshi_3707 - transposase, IS4 family protein (RefSeq), at 113,417 to 113,626 _3707 Dshi_3708: Dshi_3708 - transcriptional regulator, AraC family (RefSeq), at 113,772 to 114,608 _3708 Position (kb) 112 113 114Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 111.172 kb on - strand, within Dshi_3703at 111.192 kb on - strand, within Dshi_3703at 111.193 kb on + strand, within Dshi_3703at 111.195 kb on + strand, within Dshi_3703at 111.195 kb on + strand, within Dshi_3703at 111.203 kb on + strand, within Dshi_3703at 111.230 kb on + strand, within Dshi_3703at 111.230 kb on + strand, within Dshi_3703at 111.231 kb on - strand, within Dshi_3703at 111.231 kb on - strand, within Dshi_3703at 111.282 kb on - strand, within Dshi_3703at 111.307 kb on + strand, within Dshi_3703at 111.309 kb on + strand, within Dshi_3703at 111.315 kb on - strand, within Dshi_3703at 111.315 kb on - strand, within Dshi_3703at 111.315 kb on - strand, within Dshi_3703at 111.329 kb on - strand, within Dshi_3703at 111.379 kb on + strand, within Dshi_3703at 111.386 kb on + strand, within Dshi_3703at 111.391 kb on + strand, within Dshi_3703at 111.391 kb on + strand, within Dshi_3703at 111.399 kb on - strand, within Dshi_3703at 111.399 kb on - strand, within Dshi_3703at 111.429 kb on + strand, within Dshi_3703at 111.431 kb on + strand, within Dshi_3703at 111.460 kb on - strand, within Dshi_3703at 111.483 kb on - strand, within Dshi_3703at 111.502 kb on - strand, within Dshi_3703at 111.504 kb on + strand, within Dshi_3703at 111.504 kb on - strand, within Dshi_3703at 111.513 kb on + strand, within Dshi_3703at 111.513 kb on + strand, within Dshi_3703at 111.521 kb on - strand, within Dshi_3703at 111.569 kb on + strand, within Dshi_3703at 111.585 kb on - strand, within Dshi_3703at 111.587 kb on + strand, within Dshi_3703at 111.595 kb on - strand, within Dshi_3703at 111.596 kb on - strand, within Dshi_3703at 111.596 kb on - strand, within Dshi_3703at 111.646 kb on + strand, within Dshi_3703at 111.664 kb on + strand, within Dshi_3703at 111.672 kb on - strand, within Dshi_3703at 111.681 kb on + strand, within Dshi_3703at 111.689 kb on - strand, within Dshi_3703at 111.689 kb on - strand, within Dshi_3703at 111.716 kb on + strand, within Dshi_3703at 111.736 kb on - strand, within Dshi_3703at 111.736 kb on - strand, within Dshi_3703at 111.743 kb on + strand, within Dshi_3703at 111.745 kb on - strand, within Dshi_3703at 111.799 kb on + strand, within Dshi_3703at 111.814 kb on - strand, within Dshi_3703at 111.850 kb on + strand, within Dshi_3703at 111.856 kb on - strand, within Dshi_3703at 111.876 kb on + strand, within Dshi_3703at 111.876 kb on + strand, within Dshi_3703at 111.884 kb on - strand, within Dshi_3703at 111.884 kb on - strand, within Dshi_3703at 111.893 kb on + strand, within Dshi_3703at 111.898 kb on - strand, within Dshi_3703at 111.903 kb on + strand, within Dshi_3703at 111.903 kb on + strand, within Dshi_3703at 111.903 kb on + strand, within Dshi_3703at 111.911 kb on - strand, within Dshi_3703at 111.911 kb on - strand, within Dshi_3703at 111.911 kb on - strand, within Dshi_3703at 111.913 kb on + strand, within Dshi_3703at 111.957 kb on + strand, within Dshi_3703at 111.975 kb on - strand, within Dshi_3703at 111.975 kb on - strand, within Dshi_3703at 111.977 kb on + strand, within Dshi_3703at 111.985 kb on - strand, within Dshi_3703at 112.002 kb on + strandat 112.004 kb on - strandat 112.017 kb on - strandat 112.035 kb on - strandat 112.048 kb on + strandat 112.048 kb on + strandat 112.049 kb on + strandat 112.056 kb on - strandat 112.056 kb on - strandat 112.056 kb on - strandat 112.056 kb on - strandat 112.093 kb on + strandat 112.093 kb on + strandat 112.093 kb on + strandat 112.093 kb on + strandat 112.101 kb on - strandat 112.101 kb on - strandat 112.101 kb on - strandat 112.101 kb on - strandat 112.101 kb on - strandat 112.101 kb on - strandat 112.101 kb on - strandat 112.101 kb on - strandat 112.101 kb on - strandat 112.101 kb on - strandat 112.101 kb on - strandat 112.101 kb on - strandat 112.101 kb on - strandat 112.101 kb on - strandat 112.103 kb on + strandat 112.103 kb on + strandat 112.103 kb on + strandat 112.103 kb on + strandat 112.103 kb on + strandat 112.103 kb on + strandat 112.103 kb on + strandat 112.103 kb on + strandat 112.103 kb on + strandat 112.103 kb on + strandat 112.103 kb on + strandat 112.103 kb on + strandat 112.103 kb on + strandat 112.103 kb on + strandat 112.105 kb on + strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.111 kb on - strandat 112.113 kb on - strandat 112.113 kb on - strandat 112.113 kb on - strandat 112.146 kb on - strandat 113.453 kb on + strand, within Dshi_3707at 113.486 kb on + strand, within Dshi_3707at 113.486 kb on + strand, within Dshi_3707at 113.494 kb on - strand, within Dshi_3707at 113.501 kb on + strand, within Dshi_3707at 113.509 kb on - strand, within Dshi_3707at 113.509 kb on - strand, within Dshi_3707at 113.514 kb on + strand, within Dshi_3707at 113.519 kb on - strand, within Dshi_3707at 113.522 kb on + strand, within Dshi_3707at 113.530 kb on - strand, within Dshi_3707at 113.530 kb on - strand, within Dshi_3707at 113.538 kb on + strand, within Dshi_3707at 113.553 kb on - strand, within Dshi_3707at 113.553 kb on - strand, within Dshi_3707at 113.577 kb on - strand, within Dshi_3707at 113.577 kb on - strand, within Dshi_3707at 113.577 kb on - strand, within Dshi_3707at 113.577 kb on - strand, within Dshi_3707at 113.582 kb on + strand, within Dshi_3707at 113.582 kb on + strand, within Dshi_3707at 113.588 kb on + strand, within Dshi_3707at 113.590 kb on - strand, within Dshi_3707at 113.592 kb on + strand, within Dshi_3707at 113.606 kb on + strandat 113.606 kb on + strandat 113.614 kb on - strandat 113.614 kb on - strandat 113.618 kb on - strandat 113.624 kb on - strandat 113.628 kb on - strandat 113.634 kb on - strandat 113.702 kb on - strandat 113.707 kb on - strandat 113.709 kb on + strandat 113.709 kb on + strandat 113.717 kb on - strandat 113.751 kb on + strandat 113.765 kb on - strandat 113.777 kb on + strandat 113.790 kb on - strandat 113.792 kb on + strandat 113.807 kb on + strandat 113.807 kb on + strandat 113.807 kb on + strandat 113.810 kb on - strandat 113.815 kb on - strandat 113.815 kb on - strandat 113.840 kb on + strandat 113.843 kb on - strandat 113.843 kb on - strandat 113.872 kb on + strand, within Dshi_3708at 113.933 kb on + strand, within Dshi_3708at 113.934 kb on + strand, within Dshi_3708at 113.942 kb on - strand, within Dshi_3708at 113.949 kb on - strand, within Dshi_3708at 113.972 kb on + strand, within Dshi_3708at 114.008 kb on - strand, within Dshi_3708at 114.020 kb on + strand, within Dshi_3708at 114.044 kb on + strand, within Dshi_3708

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
remove
111,172 - Dshi_3703 0.17 -2.1
111,192 - Dshi_3703 0.19 -0.5
111,193 + Dshi_3703 0.19 -0.7
111,195 + Dshi_3703 0.19 -1.5
111,195 + Dshi_3703 0.19 -0.5
111,203 + Dshi_3703 0.20 +0.2
111,230 + Dshi_3703 0.22 +0.5
111,230 + Dshi_3703 0.22 -0.4
111,231 - Dshi_3703 0.22 +0.5
111,231 - Dshi_3703 0.22 -0.6
111,282 - Dshi_3703 0.27 +0.3
111,307 + Dshi_3703 0.29 +2.8
111,309 + Dshi_3703 0.29 +0.5
111,315 - Dshi_3703 0.30 -3.3
111,315 - Dshi_3703 0.30 -1.1
111,315 - Dshi_3703 0.30 -1.0
111,329 - Dshi_3703 0.31 -0.3
111,379 + Dshi_3703 0.35 -1.1
111,386 + Dshi_3703 0.36 -0.0
111,391 + Dshi_3703 0.37 -0.1
111,391 + Dshi_3703 0.37 +1.5
111,399 - Dshi_3703 0.37 -1.6
111,399 - Dshi_3703 0.37 +0.3
111,429 + Dshi_3703 0.40 -0.3
111,431 + Dshi_3703 0.40 +1.3
111,460 - Dshi_3703 0.43 -0.1
111,483 - Dshi_3703 0.45 +1.0
111,502 - Dshi_3703 0.46 +1.3
111,504 + Dshi_3703 0.46 -0.2
111,504 - Dshi_3703 0.46 -1.6
111,513 + Dshi_3703 0.47 -0.6
111,513 + Dshi_3703 0.47 -2.1
111,521 - Dshi_3703 0.48 -0.3
111,569 + Dshi_3703 0.52 -3.3
111,585 - Dshi_3703 0.54 +1.4
111,587 + Dshi_3703 0.54 -0.0
111,595 - Dshi_3703 0.54 -1.1
111,596 - Dshi_3703 0.55 +0.0
111,596 - Dshi_3703 0.55 -0.2
111,646 + Dshi_3703 0.59 +4.0
111,664 + Dshi_3703 0.61 -2.2
111,672 - Dshi_3703 0.61 -0.9
111,681 + Dshi_3703 0.62 -0.7
111,689 - Dshi_3703 0.63 -0.7
111,689 - Dshi_3703 0.63 -0.0
111,716 + Dshi_3703 0.65 +2.4
111,736 - Dshi_3703 0.67 -1.1
111,736 - Dshi_3703 0.67 +1.3
111,743 + Dshi_3703 0.68 -0.4
111,745 - Dshi_3703 0.68 +0.4
111,799 + Dshi_3703 0.72 -1.5
111,814 - Dshi_3703 0.74 +0.4
111,850 + Dshi_3703 0.77 -0.3
111,856 - Dshi_3703 0.77 +1.7
111,876 + Dshi_3703 0.79 +0.7
111,876 + Dshi_3703 0.79 +0.7
111,884 - Dshi_3703 0.80 -0.9
111,884 - Dshi_3703 0.80 -2.3
111,893 + Dshi_3703 0.81 -0.2
111,898 - Dshi_3703 0.81 +1.2
111,903 + Dshi_3703 0.82 -0.0
111,903 + Dshi_3703 0.82 -0.7
111,903 + Dshi_3703 0.82 -1.7
111,911 - Dshi_3703 0.82 +0.7
111,911 - Dshi_3703 0.82 -0.3
111,911 - Dshi_3703 0.82 -0.5
111,913 + Dshi_3703 0.82 +0.3
111,957 + Dshi_3703 0.86 -1.7
111,975 - Dshi_3703 0.88 +0.8
111,975 - Dshi_3703 0.88 -1.7
111,977 + Dshi_3703 0.88 +2.8
111,985 - Dshi_3703 0.89 -1.1
112,002 + -0.2
112,004 - -0.8
112,017 - -1.0
112,035 - -0.1
112,048 + -0.5
112,048 + -0.4
112,049 + +0.0
112,056 - -0.2
112,056 - +1.7
112,056 - -1.9
112,056 - -0.8
112,093 + -0.0
112,093 + +0.2
112,093 + -0.9
112,093 + -1.1
112,101 - +1.0
112,101 - -0.2
112,101 - -0.8
112,101 - +2.3
112,101 - -0.6
112,101 - +1.4
112,101 - -0.0
112,101 - +0.2
112,101 - -0.2
112,101 - -0.1
112,101 - -1.5
112,101 - +0.6
112,101 - -0.4
112,101 - -0.8
112,103 + -0.3
112,103 + -1.6
112,103 + -1.8
112,103 + -0.9
112,103 + +0.4
112,103 + -0.2
112,103 + +0.4
112,103 + -1.0
112,103 + -0.5
112,103 + -0.2
112,103 + -0.7
112,103 + -0.7
112,103 + +0.2
112,103 + -0.3
112,105 + +2.8
112,111 - -0.2
112,111 - +0.7
112,111 - -1.6
112,111 - -0.2
112,111 - -0.5
112,111 - -0.9
112,111 - +0.3
112,111 - -1.7
112,111 - -1.2
112,111 - +1.8
112,111 - -1.0
112,111 - +1.1
112,111 - -1.8
112,111 - -0.6
112,111 - +0.1
112,111 - -0.2
112,111 - -0.9
112,111 - -1.0
112,113 - -2.3
112,113 - -0.6
112,113 - +0.2
112,146 - -1.3
113,453 + Dshi_3707 0.17 +0.7
113,486 + Dshi_3707 0.33 -0.5
113,486 + Dshi_3707 0.33 +0.4
113,494 - Dshi_3707 0.37 -0.3
113,501 + Dshi_3707 0.40 -0.4
113,509 - Dshi_3707 0.44 -0.8
113,509 - Dshi_3707 0.44 +0.8
113,514 + Dshi_3707 0.46 -2.5
113,519 - Dshi_3707 0.49 -0.1
113,522 + Dshi_3707 0.50 -0.7
113,530 - Dshi_3707 0.54 -1.3
113,530 - Dshi_3707 0.54 -0.7
113,538 + Dshi_3707 0.58 +0.0
113,553 - Dshi_3707 0.65 +0.4
113,553 - Dshi_3707 0.65 -0.9
113,577 - Dshi_3707 0.76 +0.7
113,577 - Dshi_3707 0.76 +0.3
113,577 - Dshi_3707 0.76 +0.1
113,577 - Dshi_3707 0.76 -0.4
113,582 + Dshi_3707 0.79 -1.1
113,582 + Dshi_3707 0.79 +0.3
113,588 + Dshi_3707 0.81 -3.0
113,590 - Dshi_3707 0.82 -1.8
113,592 + Dshi_3707 0.83 +0.0
113,606 + -1.6
113,606 + -1.7
113,614 - -0.7
113,614 - -0.3
113,618 - +0.4
113,624 - +1.2
113,628 - -0.4
113,634 - -0.8
113,702 - +1.0
113,707 - -1.4
113,709 + +0.0
113,709 + +0.5
113,717 - -1.2
113,751 + -0.6
113,765 - -1.5
113,777 + -1.4
113,790 - -0.3
113,792 + +1.3
113,807 + -0.7
113,807 + +0.3
113,807 + +0.8
113,810 - -0.6
113,815 - +3.9
113,815 - -0.7
113,840 + -0.6
113,843 - -0.1
113,843 - -0.7
113,872 + Dshi_3708 0.12 +2.8
113,933 + Dshi_3708 0.19 -0.9
113,934 + Dshi_3708 0.19 -2.0
113,942 - Dshi_3708 0.20 +0.1
113,949 - Dshi_3708 0.21 +0.1
113,972 + Dshi_3708 0.24 -0.1
114,008 - Dshi_3708 0.28 -0.8
114,020 + Dshi_3708 0.30 -0.4
114,044 + Dshi_3708 0.32 -1.9

Or see this region's nucleotide sequence