Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3695

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3694 and Dshi_3695 are separated by 157 nucleotidesDshi_3695 and Dshi_3696 are separated by 38 nucleotides Dshi_3694: Dshi_3694 - hypothetical protein (RefSeq), at 95,796 to 97,667 _3694 Dshi_3695: Dshi_3695 - type III restriction protein res subunit (RefSeq), at 97,825 to 100,266 _3695 Dshi_3696: Dshi_3696 - integrase family protein (RefSeq), at 100,305 to 101,309 _3696 Position (kb) 97 98 99 100 101Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 96.826 kb on - strand, within Dshi_3694at 96.862 kb on - strand, within Dshi_3694at 96.968 kb on + strand, within Dshi_3694at 96.970 kb on + strand, within Dshi_3694at 96.970 kb on + strand, within Dshi_3694at 96.970 kb on + strand, within Dshi_3694at 96.992 kb on + strand, within Dshi_3694at 97.048 kb on + strand, within Dshi_3694at 97.055 kb on + strand, within Dshi_3694at 97.056 kb on - strand, within Dshi_3694at 97.056 kb on - strand, within Dshi_3694at 97.082 kb on - strand, within Dshi_3694at 97.082 kb on - strand, within Dshi_3694at 97.082 kb on - strand, within Dshi_3694at 97.082 kb on - strand, within Dshi_3694at 97.198 kb on - strand, within Dshi_3694at 97.260 kb on + strand, within Dshi_3694at 97.310 kb on - strand, within Dshi_3694at 97.328 kb on - strand, within Dshi_3694at 97.374 kb on + strand, within Dshi_3694at 97.384 kb on + strand, within Dshi_3694at 97.417 kb on - strand, within Dshi_3694at 97.417 kb on - strand, within Dshi_3694at 97.448 kb on + strand, within Dshi_3694at 97.456 kb on - strand, within Dshi_3694at 97.530 kb on - strandat 97.533 kb on + strandat 97.541 kb on - strandat 97.554 kb on + strandat 97.559 kb on + strandat 97.562 kb on - strandat 97.562 kb on - strandat 97.567 kb on - strandat 97.567 kb on - strandat 97.575 kb on - strandat 97.602 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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96,826 - Dshi_3694 0.55 +0.9
96,862 - Dshi_3694 0.57 +2.2
96,968 + Dshi_3694 0.63 -3.0
96,970 + Dshi_3694 0.63 -0.3
96,970 + Dshi_3694 0.63 +0.2
96,970 + Dshi_3694 0.63 -0.6
96,992 + Dshi_3694 0.64 -0.7
97,048 + Dshi_3694 0.67 -0.9
97,055 + Dshi_3694 0.67 +1.1
97,056 - Dshi_3694 0.67 -0.7
97,056 - Dshi_3694 0.67 -0.4
97,082 - Dshi_3694 0.69 -0.4
97,082 - Dshi_3694 0.69 +2.3
97,082 - Dshi_3694 0.69 -0.8
97,082 - Dshi_3694 0.69 +1.1
97,198 - Dshi_3694 0.75 -0.4
97,260 + Dshi_3694 0.78 +1.1
97,310 - Dshi_3694 0.81 +0.7
97,328 - Dshi_3694 0.82 -0.6
97,374 + Dshi_3694 0.84 +1.7
97,384 + Dshi_3694 0.85 -1.8
97,417 - Dshi_3694 0.87 +2.4
97,417 - Dshi_3694 0.87 +1.1
97,448 + Dshi_3694 0.88 -0.6
97,456 - Dshi_3694 0.89 -0.4
97,530 - -0.6
97,533 + -0.8
97,541 - -0.3
97,554 + -0.8
97,559 + -1.9
97,562 - -0.5
97,562 - +0.2
97,567 - -0.4
97,567 - -1.2
97,575 - +4.5
97,602 - +0.5

Or see this region's nucleotide sequence