Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3391

Experiment: m.b. Tetracycline 0.006 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Tetracycline 0.006 mg/ml
3,568,789	+		Dshi_3389	0.76	+0.1
3,568,825	-		Dshi_3389	0.80	+3.8
3,568,828	+		Dshi_3389	0.81	+0.2
3,568,835	-		Dshi_3389	0.81	-0.0
3,568,856	-		Dshi_3389	0.84	-0.2
3,568,866	+		Dshi_3389	0.85	-1.2
3,568,866	+		Dshi_3389	0.85	+0.9
3,568,874	-		Dshi_3389	0.86	+0.6
3,568,874	-		Dshi_3389	0.86	+0.6
3,568,904	-		Dshi_3389	0.90	+2.8
3,568,907	-				-0.0
3,568,908	+				+1.9
3,568,908	+				+0.6
3,568,908	+				-0.1
3,568,909	-				+0.5
3,568,909	-				+1.1
3,568,910	+				-0.0
3,568,916	-				+2.9
3,568,916	-				+1.0
3,568,922	+				-0.2
3,568,959	-				-0.5
3,568,962	+				+0.2
3,568,962	+				+0.6
3,568,963	-				+2.2
3,568,970	-				+0.8
3,569,035	+				+0.3
3,569,038	-				-0.2
3,569,041	+				+0.8
3,569,064	+		Dshi_3390	0.10	+0.4
3,569,069	-		Dshi_3390	0.11	+0.2
3,569,072	-		Dshi_3390	0.11	-0.2
3,569,072	-		Dshi_3390	0.11	+1.6
3,569,072	-		Dshi_3390	0.11	-0.4
3,569,072	-		Dshi_3390	0.11	-0.7
3,569,102	-		Dshi_3390	0.15	+2.7
3,569,104	+		Dshi_3390	0.16	-1.3
3,569,120	+		Dshi_3390	0.18	-0.2
3,569,127	-		Dshi_3390	0.19	-0.1
3,569,130	+		Dshi_3390	0.19	+0.4
3,569,131	+		Dshi_3390	0.19	-0.2
3,569,138	-		Dshi_3390	0.20	+0.5
3,569,150	+		Dshi_3390	0.22	+1.5
3,569,150	+		Dshi_3390	0.22	+0.6
3,569,150	+		Dshi_3390	0.22	-0.7
3,569,152	-		Dshi_3390	0.22	-0.5
3,569,158	-		Dshi_3390	0.23	-0.2
3,569,175	+		Dshi_3390	0.25	+0.0
3,569,175	+		Dshi_3390	0.25	-0.2
3,569,175	+		Dshi_3390	0.25	-1.8
3,569,178	+		Dshi_3390	0.25	+0.3
3,569,180	+		Dshi_3390	0.26	-0.6
3,569,183	-		Dshi_3390	0.26	-0.5
3,569,188	-		Dshi_3390	0.27	+1.7
3,569,200	+		Dshi_3390	0.28	-0.9
3,569,205	+		Dshi_3390	0.29	-0.4
3,569,205	+		Dshi_3390	0.29	-0.8
3,569,218	-		Dshi_3390	0.31	+0.5
3,569,244	-		Dshi_3390	0.34	-0.5
3,569,302	+		Dshi_3390	0.42	-0.8
3,569,324	+		Dshi_3390	0.44	+0.6
3,569,334	+		Dshi_3390	0.46	+2.4
3,569,370	-		Dshi_3390	0.51	-0.3
3,569,412	-		Dshi_3390	0.56	+1.4
3,569,472	+		Dshi_3390	0.64	-1.3
3,569,480	-		Dshi_3390	0.65	-1.4
3,569,536	+		Dshi_3390	0.72	+0.7
3,569,536	-		Dshi_3390	0.72	+0.5
3,569,544	-		Dshi_3390	0.73	+0.9
3,569,544	-		Dshi_3390	0.73	-0.5
3,569,554	-		Dshi_3390	0.75	+2.1
3,569,570	+		Dshi_3390	0.77	+1.2
3,569,648	-		Dshi_3390	0.87	+1.4
3,569,649	-		Dshi_3390	0.87	-0.4
3,569,649	-		Dshi_3390	0.87	-1.2
3,569,649	-		Dshi_3390	0.87	+4.2
3,569,675	+				+1.0
3,569,683	-				+0.5
3,569,683	-				-0.0
3,569,683	-				-0.7
3,569,690	+				-1.4
3,569,699	+				+0.1
3,569,748	+				-0.2
3,569,748	+				-0.5
3,569,748	+				-3.0
3,569,748	+				+0.4
3,569,755	+				+0.1
3,569,756	-				-0.5
3,569,756	-				-0.2
3,569,756	-				+0.9
3,569,756	-				+0.9
3,569,787	-				+0.6
3,569,812	-				+0.8
3,569,836	+		Dshi_3391	0.11	-0.5
3,569,836	+		Dshi_3391	0.11	-0.8
3,569,836	+		Dshi_3391	0.11	-0.5
3,569,836	+		Dshi_3391	0.11	-0.4
3,569,844	-		Dshi_3391	0.12	+0.4
3,569,844	-		Dshi_3391	0.12	+0.7
3,569,855	-		Dshi_3391	0.13	-1.0
3,569,860	-		Dshi_3391	0.14	-1.1
3,569,923	-		Dshi_3391	0.22	-0.4
3,569,934	-		Dshi_3391	0.23	-0.4
3,569,935	-		Dshi_3391	0.23	-0.2
3,570,027	-		Dshi_3391	0.35	-0.6
3,570,034	+		Dshi_3391	0.35	+0.6
3,570,063	-		Dshi_3391	0.39	-0.7
3,570,065	-		Dshi_3391	0.39	+1.4
3,570,065	-		Dshi_3391	0.39	+0.9
3,570,065	-		Dshi_3391	0.39	-0.2
3,570,065	-		Dshi_3391	0.39	+0.7
3,570,065	-		Dshi_3391	0.39	+0.8
3,570,129	+		Dshi_3391	0.47	+0.1
3,570,134	+		Dshi_3391	0.48	-1.1
3,570,137	-		Dshi_3391	0.48	+2.1
3,570,139	+		Dshi_3391	0.49	+2.0
3,570,199	-		Dshi_3391	0.56	-0.5
3,570,241	+		Dshi_3391	0.61	+1.1
3,570,249	-		Dshi_3391	0.62	+0.4
3,570,261	+		Dshi_3391	0.64	-0.0
3,570,289	+		Dshi_3391	0.67	-1.6
3,570,318	-		Dshi_3391	0.71	+0.4
3,570,332	+		Dshi_3391	0.73	-2.1
3,570,370	-		Dshi_3391	0.77	-0.7
3,570,406	+		Dshi_3391	0.82	+0.2
3,570,493	-				+0.1
3,570,535	+				-1.0
3,570,543	-				+1.4
3,570,543	-				-0.5
3,570,551	-				+0.6
3,570,558	+				-0.0
3,570,558	-				+1.9
3,570,566	-				-0.3
3,570,566	-				-0.4
3,570,576	-		Dshi_3392	0.10	+1.0
3,570,589	+		Dshi_3392	0.14	-0.5
3,570,589	+		Dshi_3392	0.14	-0.2
3,570,634	+		Dshi_3392	0.30	-0.4
3,570,772	+		Dshi_3392	0.77	-0.2
3,570,772	+		Dshi_3392	0.77	+2.0
3,570,835	+				+0.4
3,570,835	+				+2.4
3,570,843	-				+0.2
3,570,879	+				-0.2
3,570,879	+				+1.5
3,570,913	+				+1.5
3,571,024	-				+1.0
3,571,046	-				-0.0
3,571,119	-		Dshi_3393	0.16	+0.3
3,571,119	-		Dshi_3393	0.16	-0.6
3,571,151	+		Dshi_3393	0.19	+0.6
3,571,159	-		Dshi_3393	0.19	-0.4
3,571,167	+		Dshi_3393	0.20	+0.2
3,571,244	+		Dshi_3393	0.27	-0.1
3,571,252	-		Dshi_3393	0.28	+3.0
3,571,282	+		Dshi_3393	0.31	+2.0
3,571,282	+		Dshi_3393	0.31	+0.3
3,571,310	+		Dshi_3393	0.33	+1.4
3,571,316	+		Dshi_3393	0.34	+1.0
3,571,318	-		Dshi_3393	0.34	-0.4
3,571,359	+		Dshi_3393	0.38	-0.1
3,571,372	+		Dshi_3393	0.39	+3.8
3,571,399	+		Dshi_3393	0.42	+0.2
3,571,408	+		Dshi_3393	0.42	+0.8
3,571,463	+		Dshi_3393	0.48	+0.4
3,571,509	-		Dshi_3393	0.52	+0.5
3,571,521	+		Dshi_3393	0.53	-0.4