Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3155 and Dshi_3156 are separated by 3 nucleotides Dshi_3156 and Dshi_3157 are separated by 84 nucleotides Dshi_3157 and Dshi_3158 are separated by 2 nucleotides Dshi_3158 and Dshi_3159 overlap by 1 nucleotides
Dshi_3155: Dshi_3155 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 3,320,427 to 3,321,716
_3155
Dshi_3156: Dshi_3156 - hypothetical protein (RefSeq), at 3,321,720 to 3,322,373
_3156
Dshi_3157: Dshi_3157 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 3,322,458 to 3,323,468
_3157
Dshi_3158: Dshi_3158 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 3,323,471 to 3,323,968
_3158
Dshi_3159: Dshi_3159 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 3,323,968 to 3,325,263
_3159
Position (kb)
3322
3323
3324 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3321.562 kb on + strand, within Dshi_3155 at 3321.710 kb on + strand at 3321.741 kb on - strand at 3321.812 kb on - strand, within Dshi_3156 at 3321.815 kb on + strand, within Dshi_3156 at 3321.899 kb on - strand, within Dshi_3156 at 3322.119 kb on + strand, within Dshi_3156 at 3322.241 kb on + strand, within Dshi_3156 at 3322.314 kb on + strand at 3322.347 kb on + strand at 3322.663 kb on + strand, within Dshi_3157 at 3322.985 kb on + strand, within Dshi_3157 at 3323.052 kb on - strand, within Dshi_3157 at 3323.207 kb on - strand, within Dshi_3157 at 3323.317 kb on - strand, within Dshi_3157 at 3323.349 kb on + strand, within Dshi_3157 at 3323.349 kb on + strand, within Dshi_3157 at 3323.357 kb on - strand, within Dshi_3157 at 3323.632 kb on - strand, within Dshi_3158 at 3323.857 kb on + strand, within Dshi_3158 at 3323.870 kb on - strand, within Dshi_3158 at 3323.892 kb on - strand, within Dshi_3158 at 3323.895 kb on + strand, within Dshi_3158 at 3323.974 kb on + strand at 3324.022 kb on + strand at 3324.033 kb on + strand at 3324.049 kb on - strand at 3324.193 kb on - strand, within Dshi_3159 at 3324.212 kb on - strand, within Dshi_3159 at 3324.219 kb on + strand, within Dshi_3159 at 3324.420 kb on + strand, within Dshi_3159
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 3,321,562 + Dshi_3155 0.88 +0.3 3,321,710 + -0.3 3,321,741 - +1.3 3,321,812 - Dshi_3156 0.14 -0.2 3,321,815 + Dshi_3156 0.15 -1.1 3,321,899 - Dshi_3156 0.27 -0.3 3,322,119 + Dshi_3156 0.61 +0.7 3,322,241 + Dshi_3156 0.80 -0.9 3,322,314 + +1.0 3,322,347 + +0.8 3,322,663 + Dshi_3157 0.20 +0.7 3,322,985 + Dshi_3157 0.52 -2.0 3,323,052 - Dshi_3157 0.59 -2.3 3,323,207 - Dshi_3157 0.74 +0.7 3,323,317 - Dshi_3157 0.85 +0.7 3,323,349 + Dshi_3157 0.88 +0.7 3,323,349 + Dshi_3157 0.88 -0.4 3,323,357 - Dshi_3157 0.89 +0.4 3,323,632 - Dshi_3158 0.32 -0.3 3,323,857 + Dshi_3158 0.78 +2.3 3,323,870 - Dshi_3158 0.80 -1.6 3,323,892 - Dshi_3158 0.85 -0.3 3,323,895 + Dshi_3158 0.85 -2.3 3,323,974 + +1.7 3,324,022 + +0.7 3,324,033 + -0.1 3,324,049 - -1.8 3,324,193 - Dshi_3159 0.17 +0.7 3,324,212 - Dshi_3159 0.19 +1.7 3,324,219 + Dshi_3159 0.19 +0.7 3,324,420 + Dshi_3159 0.35 -0.1
Or see this region's nucleotide sequence