Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3156
Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Tetracycline 0.006 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,320,754 | - | Dshi_3155 | 0.25 | -0.2 | |
3,321,157 | - | Dshi_3155 | 0.57 | -0.1 | |
3,321,233 | + | Dshi_3155 | 0.62 | -2.8 | |
3,321,347 | - | Dshi_3155 | 0.71 | -0.8 | |
3,321,357 | + | Dshi_3155 | 0.72 | +1.7 | |
3,321,562 | + | Dshi_3155 | 0.88 | +0.3 | |
3,321,710 | + | -0.3 | |||
3,321,741 | - | +1.3 | |||
3,321,812 | - | Dshi_3156 | 0.14 | -0.2 | |
3,321,815 | + | Dshi_3156 | 0.15 | -1.1 | |
3,321,899 | - | Dshi_3156 | 0.27 | -0.3 | |
3,322,119 | + | Dshi_3156 | 0.61 | +0.7 | |
3,322,241 | + | Dshi_3156 | 0.80 | -0.9 | |
3,322,314 | + | +1.0 | |||
3,322,347 | + | +0.8 | |||
3,322,663 | + | Dshi_3157 | 0.20 | +0.7 | |
3,322,985 | + | Dshi_3157 | 0.52 | -2.0 | |
3,323,052 | - | Dshi_3157 | 0.59 | -2.3 | |
3,323,207 | - | Dshi_3157 | 0.74 | +0.7 | |
3,323,317 | - | Dshi_3157 | 0.85 | +0.7 | |
3,323,349 | + | Dshi_3157 | 0.88 | +0.7 | |
3,323,349 | + | Dshi_3157 | 0.88 | -0.4 | |
3,323,357 | - | Dshi_3157 | 0.89 | +0.4 |
Or see this region's nucleotide sequence