Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3075 and Dshi_3076 are separated by 159 nucleotides Dshi_3076 and Dshi_3077 are separated by 77 nucleotides
Dshi_3075: Dshi_3075 - Electron-transferring-flavoproteindehydrogenase (RefSeq), at 3,242,821 to 3,244,470
_3075
Dshi_3076: Dshi_3076 - transcription elongation factor GreA (RefSeq), at 3,244,630 to 3,245,145
_3076
Dshi_3077: Dshi_3077 - hypothetical protein (RefSeq), at 3,245,223 to 3,246,209
_3077
Position (kb)
3244
3245
3246 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3244.482 kb on - strand at 3244.573 kb on + strand at 3244.581 kb on - strand at 3244.593 kb on + strand at 3244.602 kb on - strand at 3244.606 kb on - strand at 3244.724 kb on - strand, within Dshi_3076 at 3244.734 kb on + strand, within Dshi_3076 at 3244.740 kb on - strand, within Dshi_3076 at 3244.742 kb on - strand, within Dshi_3076 at 3244.772 kb on + strand, within Dshi_3076 at 3244.891 kb on + strand, within Dshi_3076 at 3244.910 kb on - strand, within Dshi_3076 at 3244.998 kb on + strand, within Dshi_3076 at 3245.063 kb on + strand, within Dshi_3076 at 3245.081 kb on + strand, within Dshi_3076 at 3245.096 kb on - strand at 3245.199 kb on + strand at 3245.215 kb on + strand at 3245.521 kb on + strand, within Dshi_3077 at 3245.672 kb on + strand, within Dshi_3077 at 3245.792 kb on + strand, within Dshi_3077 at 3245.792 kb on + strand, within Dshi_3077 at 3245.805 kb on - strand, within Dshi_3077 at 3246.122 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 3,244,482 - -2.6 3,244,573 + -0.0 3,244,581 - -1.6 3,244,593 + -2.3 3,244,602 - +0.2 3,244,606 - -2.1 3,244,724 - Dshi_3076 0.18 -0.2 3,244,734 + Dshi_3076 0.20 +0.7 3,244,740 - Dshi_3076 0.21 -1.5 3,244,742 - Dshi_3076 0.22 +1.7 3,244,772 + Dshi_3076 0.28 -0.9 3,244,891 + Dshi_3076 0.51 -0.1 3,244,910 - Dshi_3076 0.54 -0.7 3,244,998 + Dshi_3076 0.71 -0.3 3,245,063 + Dshi_3076 0.84 -1.3 3,245,081 + Dshi_3076 0.87 -1.3 3,245,096 - -1.6 3,245,199 + -0.9 3,245,215 + +0.2 3,245,521 + Dshi_3077 0.30 +1.0 3,245,672 + Dshi_3077 0.45 +0.2 3,245,792 + Dshi_3077 0.58 +0.7 3,245,792 + Dshi_3077 0.58 +1.3 3,245,805 - Dshi_3077 0.59 -3.1 3,246,122 - +3.9
Or see this region's nucleotide sequence