Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2960

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2959 and Dshi_2960 overlap by 4 nucleotidesDshi_2960 and Dshi_2961 overlap by 4 nucleotides Dshi_2959: Dshi_2959 - Xanthine dehydrogenase (EC 1.17.1.4) (from data), at 3,123,160 to 3,125,505 _2959 Dshi_2960: Dshi_2960 - Xanthine dehydrogenase accessory protein XdhC (RefSeq), at 3,125,502 to 3,126,464 _2960 Dshi_2961: Dshi_2961 - ABC transporter related (RefSeq), at 3,126,461 to 3,127,996 _2961 Position (kb) 3125 3126 3127Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3124.516 kb on + strand, within Dshi_2959at 3124.554 kb on + strand, within Dshi_2959at 3124.577 kb on - strand, within Dshi_2959at 3124.587 kb on + strand, within Dshi_2959at 3124.596 kb on - strand, within Dshi_2959at 3124.609 kb on + strand, within Dshi_2959at 3124.647 kb on + strand, within Dshi_2959at 3124.952 kb on - strand, within Dshi_2959at 3124.979 kb on - strand, within Dshi_2959at 3124.982 kb on + strand, within Dshi_2959at 3124.991 kb on - strand, within Dshi_2959at 3125.004 kb on + strand, within Dshi_2959at 3125.012 kb on - strand, within Dshi_2959at 3125.050 kb on + strand, within Dshi_2959at 3125.053 kb on - strand, within Dshi_2959at 3125.171 kb on + strand, within Dshi_2959at 3125.171 kb on + strand, within Dshi_2959at 3125.219 kb on - strand, within Dshi_2959at 3125.438 kb on + strandat 3125.448 kb on + strandat 3125.750 kb on - strand, within Dshi_2960at 3125.766 kb on + strand, within Dshi_2960at 3125.813 kb on + strand, within Dshi_2960at 3125.965 kb on + strand, within Dshi_2960at 3125.997 kb on + strand, within Dshi_2960at 3126.056 kb on + strand, within Dshi_2960at 3126.057 kb on + strand, within Dshi_2960at 3126.172 kb on + strand, within Dshi_2960at 3126.239 kb on + strand, within Dshi_2960at 3126.373 kb on + strandat 3126.434 kb on + strandat 3126.490 kb on + strandat 3126.504 kb on - strandat 3126.548 kb on + strandat 3126.562 kb on - strandat 3126.606 kb on - strandat 3126.710 kb on - strand, within Dshi_2961at 3126.711 kb on - strand, within Dshi_2961at 3126.826 kb on + strand, within Dshi_2961at 3126.834 kb on - strand, within Dshi_2961at 3126.951 kb on + strand, within Dshi_2961at 3127.278 kb on + strand, within Dshi_2961at 3127.286 kb on - strand, within Dshi_2961at 3127.331 kb on + strand, within Dshi_2961at 3127.437 kb on + strand, within Dshi_2961

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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3,124,516 + Dshi_2959 0.58 -0.3
3,124,554 + Dshi_2959 0.59 +1.7
3,124,577 - Dshi_2959 0.60 -0.4
3,124,587 + Dshi_2959 0.61 -0.7
3,124,596 - Dshi_2959 0.61 -0.5
3,124,609 + Dshi_2959 0.62 +1.3
3,124,647 + Dshi_2959 0.63 -1.2
3,124,952 - Dshi_2959 0.76 -0.7
3,124,979 - Dshi_2959 0.78 -0.7
3,124,982 + Dshi_2959 0.78 +0.7
3,124,991 - Dshi_2959 0.78 +2.4
3,125,004 + Dshi_2959 0.79 +2.7
3,125,012 - Dshi_2959 0.79 +1.2
3,125,050 + Dshi_2959 0.81 -0.2
3,125,053 - Dshi_2959 0.81 -2.1
3,125,171 + Dshi_2959 0.86 +0.7
3,125,171 + Dshi_2959 0.86 +0.7
3,125,219 - Dshi_2959 0.88 -0.8
3,125,438 + -0.9
3,125,448 + -0.6
3,125,750 - Dshi_2960 0.26 -0.5
3,125,766 + Dshi_2960 0.27 +0.7
3,125,813 + Dshi_2960 0.32 +0.7
3,125,965 + Dshi_2960 0.48 -1.1
3,125,997 + Dshi_2960 0.51 -1.1
3,126,056 + Dshi_2960 0.58 +0.7
3,126,057 + Dshi_2960 0.58 +0.8
3,126,172 + Dshi_2960 0.70 -0.6
3,126,239 + Dshi_2960 0.77 +1.0
3,126,373 + -0.4
3,126,434 + -0.9
3,126,490 + +0.3
3,126,504 - -1.3
3,126,548 + -1.2
3,126,562 - +0.7
3,126,606 - -1.3
3,126,710 - Dshi_2961 0.16 +0.7
3,126,711 - Dshi_2961 0.16 -2.3
3,126,826 + Dshi_2961 0.24 -0.3
3,126,834 - Dshi_2961 0.24 -0.1
3,126,951 + Dshi_2961 0.32 -1.1
3,127,278 + Dshi_2961 0.53 -3.0
3,127,286 - Dshi_2961 0.54 -1.4
3,127,331 + Dshi_2961 0.57 -0.7
3,127,437 + Dshi_2961 0.64 -0.1

Or see this region's nucleotide sequence