Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2920
Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Tetracycline 0.006 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,079,370 | + | -0.9 | |||
3,079,381 | + | -0.9 | |||
3,079,386 | + | -2.6 | |||
3,079,392 | + | +0.7 | |||
3,079,405 | - | +2.3 | |||
3,079,405 | - | +1.7 | |||
3,079,405 | - | +1.7 | |||
3,079,414 | + | +0.7 | |||
3,079,422 | - | -0.9 | |||
3,079,565 | + | +1.3 | |||
3,079,565 | + | -1.0 | |||
3,079,565 | + | +1.7 | |||
3,079,565 | + | -0.8 | |||
3,079,565 | + | -1.6 | |||
3,079,565 | + | -0.1 | |||
3,079,565 | + | -2.9 | |||
3,079,565 | + | +0.7 | |||
3,079,573 | - | -0.3 | |||
3,079,573 | - | +0.7 | |||
3,079,573 | - | -1.5 | |||
3,079,573 | - | -2.1 | |||
3,079,573 | - | +0.7 | |||
3,079,573 | - | +2.3 | |||
3,079,573 | - | -0.9 | |||
3,079,573 | - | -2.1 | |||
3,079,575 | + | -2.3 | |||
3,079,665 | + | Dshi_2921 | 0.12 | +1.7 | |
3,079,679 | + | Dshi_2921 | 0.13 | -0.9 | |
3,079,720 | + | Dshi_2921 | 0.17 | -3.0 | |
3,079,726 | - | Dshi_2921 | 0.18 | +0.7 | |
3,079,740 | + | Dshi_2921 | 0.19 | -2.3 | |
3,079,747 | - | Dshi_2921 | 0.20 | +0.7 | |
3,079,747 | - | Dshi_2921 | 0.20 | -0.9 | |
3,079,747 | - | Dshi_2921 | 0.20 | -1.7 | |
3,079,751 | + | Dshi_2921 | 0.21 | +1.7 | |
3,079,754 | - | Dshi_2921 | 0.21 | +0.5 | |
3,079,754 | - | Dshi_2921 | 0.21 | -1.7 | |
3,079,774 | + | Dshi_2921 | 0.23 | -1.0 | |
3,079,799 | + | Dshi_2921 | 0.25 | -0.9 | |
3,080,092 | + | Dshi_2921 | 0.55 | -3.7 |
Or see this region's nucleotide sequence