Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2905

Experiment: m.b. Tetracycline 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2904 and Dshi_2905 overlap by 1 nucleotidesDshi_2905 and Dshi_2906 overlap by 4 nucleotides Dshi_2904: Dshi_2904 - hypothetical protein (RefSeq), at 3,061,174 to 3,063,948 _2904 Dshi_2905: Dshi_2905 - hypothetical protein (RefSeq), at 3,063,948 to 3,064,850 _2905 Dshi_2906: Dshi_2906 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 3,064,847 to 3,065,854 _2906 Position (kb) 3063 3064 3065Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3063.053 kb on - strand, within Dshi_2904at 3063.161 kb on - strand, within Dshi_2904at 3063.431 kb on - strand, within Dshi_2904at 3063.433 kb on + strand, within Dshi_2904at 3063.433 kb on + strand, within Dshi_2904at 3063.466 kb on - strand, within Dshi_2904at 3063.472 kb on - strand, within Dshi_2904at 3063.646 kb on + strand, within Dshi_2904at 3063.911 kb on - strandat 3063.933 kb on + strandat 3063.984 kb on - strandat 3064.026 kb on + strandat 3064.033 kb on + strandat 3064.070 kb on - strand, within Dshi_2905at 3064.242 kb on + strand, within Dshi_2905at 3064.242 kb on + strand, within Dshi_2905at 3064.323 kb on + strand, within Dshi_2905at 3064.362 kb on + strand, within Dshi_2905at 3064.676 kb on + strand, within Dshi_2905at 3064.693 kb on + strand, within Dshi_2905at 3064.826 kb on + strandat 3064.834 kb on - strandat 3064.935 kb on - strandat 3064.970 kb on - strand, within Dshi_2906at 3064.975 kb on - strand, within Dshi_2906at 3065.127 kb on + strand, within Dshi_2906at 3065.197 kb on - strand, within Dshi_2906at 3065.502 kb on + strand, within Dshi_2906at 3065.608 kb on + strand, within Dshi_2906at 3065.616 kb on - strand, within Dshi_2906at 3065.652 kb on - strand, within Dshi_2906at 3065.652 kb on - strand, within Dshi_2906at 3065.652 kb on - strand, within Dshi_2906at 3065.674 kb on - strand, within Dshi_2906at 3065.674 kb on - strand, within Dshi_2906at 3065.684 kb on - strand, within Dshi_2906at 3065.690 kb on + strand, within Dshi_2906at 3065.697 kb on + strand, within Dshi_2906at 3065.723 kb on - strand, within Dshi_2906at 3065.826 kb on + strandat 3065.847 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
remove
3,063,053 - Dshi_2904 0.68 +0.7
3,063,161 - Dshi_2904 0.72 -1.9
3,063,431 - Dshi_2904 0.81 -0.9
3,063,433 + Dshi_2904 0.81 -1.6
3,063,433 + Dshi_2904 0.81 +0.7
3,063,466 - Dshi_2904 0.83 -0.7
3,063,472 - Dshi_2904 0.83 +0.7
3,063,646 + Dshi_2904 0.89 +0.7
3,063,911 - +2.0
3,063,933 + -1.6
3,063,984 - -0.3
3,064,026 + +1.7
3,064,033 + +2.7
3,064,070 - Dshi_2905 0.14 -0.7
3,064,242 + Dshi_2905 0.33 -1.1
3,064,242 + Dshi_2905 0.33 +0.7
3,064,323 + Dshi_2905 0.42 -0.9
3,064,362 + Dshi_2905 0.46 -0.7
3,064,676 + Dshi_2905 0.81 -0.3
3,064,693 + Dshi_2905 0.83 +2.7
3,064,826 + +0.7
3,064,834 - -2.0
3,064,935 - -0.6
3,064,970 - Dshi_2906 0.12 -1.6
3,064,975 - Dshi_2906 0.13 +1.1
3,065,127 + Dshi_2906 0.28 -3.5
3,065,197 - Dshi_2906 0.35 +0.7
3,065,502 + Dshi_2906 0.65 +0.1
3,065,608 + Dshi_2906 0.75 +2.3
3,065,616 - Dshi_2906 0.76 -0.1
3,065,652 - Dshi_2906 0.80 +0.7
3,065,652 - Dshi_2906 0.80 -0.9
3,065,652 - Dshi_2906 0.80 -1.6
3,065,674 - Dshi_2906 0.82 -0.2
3,065,674 - Dshi_2906 0.82 -1.5
3,065,684 - Dshi_2906 0.83 -0.3
3,065,690 + Dshi_2906 0.84 -1.7
3,065,697 + Dshi_2906 0.84 +2.3
3,065,723 - Dshi_2906 0.87 +4.0
3,065,826 + +0.7
3,065,847 + -2.9

Or see this region's nucleotide sequence