Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2904 and Dshi_2905 overlap by 1 nucleotides Dshi_2905 and Dshi_2906 overlap by 4 nucleotides
Dshi_2904: Dshi_2904 - hypothetical protein (RefSeq), at 3,061,174 to 3,063,948
_2904
Dshi_2905: Dshi_2905 - hypothetical protein (RefSeq), at 3,063,948 to 3,064,850
_2905
Dshi_2906: Dshi_2906 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 3,064,847 to 3,065,854
_2906
Position (kb)
3063
3064
3065 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3063.053 kb on - strand, within Dshi_2904 at 3063.161 kb on - strand, within Dshi_2904 at 3063.431 kb on - strand, within Dshi_2904 at 3063.433 kb on + strand, within Dshi_2904 at 3063.433 kb on + strand, within Dshi_2904 at 3063.466 kb on - strand, within Dshi_2904 at 3063.472 kb on - strand, within Dshi_2904 at 3063.646 kb on + strand, within Dshi_2904 at 3063.911 kb on - strand at 3063.933 kb on + strand at 3063.984 kb on - strand at 3064.026 kb on + strand at 3064.033 kb on + strand at 3064.070 kb on - strand, within Dshi_2905 at 3064.242 kb on + strand, within Dshi_2905 at 3064.242 kb on + strand, within Dshi_2905 at 3064.323 kb on + strand, within Dshi_2905 at 3064.362 kb on + strand, within Dshi_2905 at 3064.676 kb on + strand, within Dshi_2905 at 3064.693 kb on + strand, within Dshi_2905 at 3064.826 kb on + strand at 3064.834 kb on - strand at 3064.935 kb on - strand at 3064.970 kb on - strand, within Dshi_2906 at 3064.975 kb on - strand, within Dshi_2906 at 3065.127 kb on + strand, within Dshi_2906 at 3065.197 kb on - strand, within Dshi_2906 at 3065.502 kb on + strand, within Dshi_2906 at 3065.608 kb on + strand, within Dshi_2906 at 3065.616 kb on - strand, within Dshi_2906 at 3065.652 kb on - strand, within Dshi_2906 at 3065.652 kb on - strand, within Dshi_2906 at 3065.652 kb on - strand, within Dshi_2906 at 3065.674 kb on - strand, within Dshi_2906 at 3065.674 kb on - strand, within Dshi_2906 at 3065.684 kb on - strand, within Dshi_2906 at 3065.690 kb on + strand, within Dshi_2906 at 3065.697 kb on + strand, within Dshi_2906 at 3065.723 kb on - strand, within Dshi_2906 at 3065.826 kb on + strand at 3065.847 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 3,063,053 - Dshi_2904 0.68 +0.7 3,063,161 - Dshi_2904 0.72 -1.9 3,063,431 - Dshi_2904 0.81 -0.9 3,063,433 + Dshi_2904 0.81 -1.6 3,063,433 + Dshi_2904 0.81 +0.7 3,063,466 - Dshi_2904 0.83 -0.7 3,063,472 - Dshi_2904 0.83 +0.7 3,063,646 + Dshi_2904 0.89 +0.7 3,063,911 - +2.0 3,063,933 + -1.6 3,063,984 - -0.3 3,064,026 + +1.7 3,064,033 + +2.7 3,064,070 - Dshi_2905 0.14 -0.7 3,064,242 + Dshi_2905 0.33 -1.1 3,064,242 + Dshi_2905 0.33 +0.7 3,064,323 + Dshi_2905 0.42 -0.9 3,064,362 + Dshi_2905 0.46 -0.7 3,064,676 + Dshi_2905 0.81 -0.3 3,064,693 + Dshi_2905 0.83 +2.7 3,064,826 + +0.7 3,064,834 - -2.0 3,064,935 - -0.6 3,064,970 - Dshi_2906 0.12 -1.6 3,064,975 - Dshi_2906 0.13 +1.1 3,065,127 + Dshi_2906 0.28 -3.5 3,065,197 - Dshi_2906 0.35 +0.7 3,065,502 + Dshi_2906 0.65 +0.1 3,065,608 + Dshi_2906 0.75 +2.3 3,065,616 - Dshi_2906 0.76 -0.1 3,065,652 - Dshi_2906 0.80 +0.7 3,065,652 - Dshi_2906 0.80 -0.9 3,065,652 - Dshi_2906 0.80 -1.6 3,065,674 - Dshi_2906 0.82 -0.2 3,065,674 - Dshi_2906 0.82 -1.5 3,065,684 - Dshi_2906 0.83 -0.3 3,065,690 + Dshi_2906 0.84 -1.7 3,065,697 + Dshi_2906 0.84 +2.3 3,065,723 - Dshi_2906 0.87 +4.0 3,065,826 + +0.7 3,065,847 + -2.9
Or see this region's nucleotide sequence