Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2778
Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Tetracycline 0.006 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,939,242 | + | -1.8 | |||
2,939,260 | - | -2.1 | |||
2,939,362 | - | Dshi_2777 | 0.14 | +1.7 | |
2,939,400 | + | Dshi_2777 | 0.18 | -0.3 | |
2,939,419 | - | Dshi_2777 | 0.20 | -3.1 | |
2,939,472 | - | Dshi_2777 | 0.27 | -0.3 | |
2,939,521 | - | Dshi_2777 | 0.32 | +2.3 | |
2,939,538 | - | Dshi_2777 | 0.34 | +0.7 | |
2,939,565 | + | Dshi_2777 | 0.38 | +2.0 | |
2,939,837 | - | Dshi_2777 | 0.69 | +1.8 | |
2,939,982 | - | Dshi_2777 | 0.86 | -1.6 | |
2,940,175 | - | -0.9 | |||
2,940,244 | - | +1.7 | |||
2,940,310 | - | Dshi_2778 | 0.39 | -2.1 | |
2,940,394 | - | Dshi_2778 | 0.78 | -0.9 | |
2,940,419 | - | Dshi_2778 | 0.89 | +1.7 | |
2,940,520 | + | +1.7 | |||
2,940,533 | + | -0.3 | |||
2,940,803 | - | Dshi_2779 | 0.25 | -4.0 | |
2,941,075 | + | Dshi_2779 | 0.63 | -0.3 | |
2,941,174 | + | Dshi_2779 | 0.76 | -1.3 |
Or see this region's nucleotide sequence