Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2690 and Dshi_2691 are separated by 143 nucleotides Dshi_2691 and Dshi_2692 are separated by 12 nucleotides Dshi_2692 and Dshi_2693 are separated by 35 nucleotides Dshi_2693 and Dshi_2694 are separated by 163 nucleotides
Dshi_2690: Dshi_2690 - hypothetical protein (RefSeq), at 2,850,801 to 2,851,355
_2690
Dshi_2691: Dshi_2691 - Hydroxyacylglutathione hydrolase (RefSeq), at 2,851,499 to 2,852,269
_2691
Dshi_2692: Dshi_2692 - protein of unknown function DUF1194 (RefSeq), at 2,852,282 to 2,853,010
_2692
Dshi_2693: Dshi_2693 - protein of unknown function DUF606 (RefSeq), at 2,853,046 to 2,853,459
_2693
Dshi_2694: Dshi_2694 - cytochrome c family protein, putative (RefSeq), at 2,853,623 to 2,854,024
_2694
Position (kb)
2852
2853
2854 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2851.323 kb on - strand at 2851.346 kb on - strand at 2851.481 kb on + strand at 2851.530 kb on - strand at 2851.605 kb on + strand, within Dshi_2691 at 2851.612 kb on + strand, within Dshi_2691 at 2851.725 kb on - strand, within Dshi_2691 at 2851.742 kb on + strand, within Dshi_2691 at 2851.742 kb on + strand, within Dshi_2691 at 2851.749 kb on - strand, within Dshi_2691 at 2851.838 kb on + strand, within Dshi_2691 at 2851.868 kb on - strand, within Dshi_2691 at 2851.886 kb on + strand, within Dshi_2691 at 2851.914 kb on - strand, within Dshi_2691 at 2851.938 kb on - strand, within Dshi_2691 at 2852.024 kb on - strand, within Dshi_2691 at 2852.079 kb on - strand, within Dshi_2691 at 2852.092 kb on + strand, within Dshi_2691 at 2852.126 kb on - strand, within Dshi_2691 at 2852.126 kb on - strand, within Dshi_2691 at 2852.140 kb on + strand, within Dshi_2691 at 2852.160 kb on + strand, within Dshi_2691 at 2852.161 kb on + strand, within Dshi_2691 at 2852.198 kb on + strand at 2852.288 kb on - strand at 2852.457 kb on + strand, within Dshi_2692 at 2852.608 kb on - strand, within Dshi_2692 at 2852.640 kb on + strand, within Dshi_2692 at 2852.658 kb on - strand, within Dshi_2692 at 2852.658 kb on - strand, within Dshi_2692 at 2852.757 kb on + strand, within Dshi_2692 at 2853.021 kb on - strand at 2853.021 kb on - strand at 2853.222 kb on + strand, within Dshi_2693 at 2853.230 kb on - strand, within Dshi_2693 at 2853.230 kb on - strand, within Dshi_2693 at 2853.266 kb on - strand, within Dshi_2693 at 2853.308 kb on - strand, within Dshi_2693 at 2853.478 kb on + strand at 2853.578 kb on - strand at 2853.588 kb on - strand at 2853.595 kb on - strand at 2853.615 kb on + strand at 2853.646 kb on + strand at 2853.793 kb on + strand, within Dshi_2694 at 2853.960 kb on + strand, within Dshi_2694
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 2,851,323 - -0.8 2,851,346 - -0.1 2,851,481 + -2.2 2,851,530 - -0.4 2,851,605 + Dshi_2691 0.14 -0.5 2,851,612 + Dshi_2691 0.15 +1.6 2,851,725 - Dshi_2691 0.29 -0.6 2,851,742 + Dshi_2691 0.32 +0.6 2,851,742 + Dshi_2691 0.32 -0.1 2,851,749 - Dshi_2691 0.32 -0.7 2,851,838 + Dshi_2691 0.44 +0.6 2,851,868 - Dshi_2691 0.48 -0.4 2,851,886 + Dshi_2691 0.50 +0.6 2,851,914 - Dshi_2691 0.54 +2.2 2,851,938 - Dshi_2691 0.57 +1.6 2,852,024 - Dshi_2691 0.68 -0.0 2,852,079 - Dshi_2691 0.75 -0.9 2,852,092 + Dshi_2691 0.77 +0.6 2,852,126 - Dshi_2691 0.81 +2.6 2,852,126 - Dshi_2691 0.81 +1.6 2,852,140 + Dshi_2691 0.83 -2.0 2,852,160 + Dshi_2691 0.86 -2.0 2,852,161 + Dshi_2691 0.86 -0.4 2,852,198 + +2.6 2,852,288 - -0.4 2,852,457 + Dshi_2692 0.24 -1.0 2,852,608 - Dshi_2692 0.45 +0.6 2,852,640 + Dshi_2692 0.49 +1.0 2,852,658 - Dshi_2692 0.52 +2.2 2,852,658 - Dshi_2692 0.52 +0.6 2,852,757 + Dshi_2692 0.65 -0.6 2,853,021 - -0.2 2,853,021 - +0.6 2,853,222 + Dshi_2693 0.43 +0.6 2,853,230 - Dshi_2693 0.44 +0.6 2,853,230 - Dshi_2693 0.44 -1.8 2,853,266 - Dshi_2693 0.53 +0.6 2,853,308 - Dshi_2693 0.63 +0.6 2,853,478 + -0.2 2,853,578 - -2.4 2,853,588 - -1.7 2,853,595 - -1.7 2,853,615 + -1.1 2,853,646 + +0.6 2,853,793 + Dshi_2694 0.42 +1.9 2,853,960 + Dshi_2694 0.84 +0.6
Or see this region's nucleotide sequence