Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2603 and Dshi_2604 are separated by 84 nucleotides Dshi_2604 and Dshi_2605 are separated by 12 nucleotides Dshi_2605 and Dshi_2606 are separated by 65 nucleotides Dshi_2606 and Dshi_2607 are separated by 119 nucleotides
Dshi_2603: Dshi_2603 - oligoendopeptidase, pepF/M3 family (RefSeq), at 2,767,996 to 2,769,831
_2603
Dshi_2604: Dshi_2604 - protein of unknown function DUF805 (RefSeq), at 2,769,916 to 2,770,317
_2604
Dshi_2605: Dshi_2605 - hypothetical protein (RefSeq), at 2,770,330 to 2,770,554
_2605
Dshi_2606: Dshi_2606 - zinc finger CDGSH-type domain protein (RefSeq), at 2,770,620 to 2,770,862
_2606
Dshi_2607: Dshi_2607 - hypothetical protein (RefSeq), at 2,770,982 to 2,771,284
_2607
Position (kb)
2769
2770
2771 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2768.934 kb on + strand, within Dshi_2603 at 2768.961 kb on - strand, within Dshi_2603 at 2768.961 kb on - strand, within Dshi_2603 at 2769.025 kb on + strand, within Dshi_2603 at 2769.072 kb on + strand, within Dshi_2603 at 2769.208 kb on - strand, within Dshi_2603 at 2769.439 kb on - strand, within Dshi_2603 at 2769.515 kb on - strand, within Dshi_2603 at 2769.524 kb on - strand, within Dshi_2603 at 2769.554 kb on - strand, within Dshi_2603 at 2769.555 kb on + strand, within Dshi_2603 at 2769.556 kb on + strand, within Dshi_2603 at 2769.561 kb on + strand, within Dshi_2603 at 2769.707 kb on + strand at 2769.715 kb on - strand at 2769.717 kb on + strand at 2769.745 kb on - strand at 2769.760 kb on - strand at 2769.804 kb on - strand at 2769.822 kb on + strand at 2769.944 kb on - strand at 2770.029 kb on + strand, within Dshi_2604 at 2770.350 kb on + strand at 2770.363 kb on - strand, within Dshi_2605 at 2770.445 kb on - strand, within Dshi_2605 at 2770.470 kb on - strand, within Dshi_2605 at 2770.507 kb on + strand, within Dshi_2605 at 2770.617 kb on - strand at 2770.645 kb on - strand, within Dshi_2606 at 2770.740 kb on - strand, within Dshi_2606 at 2770.796 kb on - strand, within Dshi_2606 at 2770.902 kb on - strand at 2770.956 kb on + strand at 2770.958 kb on + strand at 2770.980 kb on + strand at 2770.980 kb on + strand at 2770.988 kb on - strand at 2770.988 kb on - strand at 2771.001 kb on + strand at 2771.156 kb on + strand, within Dshi_2607 at 2771.183 kb on + strand, within Dshi_2607 at 2771.193 kb on + strand, within Dshi_2607 at 2771.223 kb on + strand, within Dshi_2607 at 2771.255 kb on - strand at 2771.287 kb on + strand at 2771.290 kb on - strand at 2771.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 2,768,934 + Dshi_2603 0.51 +0.3 2,768,961 - Dshi_2603 0.53 +1.3 2,768,961 - Dshi_2603 0.53 -0.2 2,769,025 + Dshi_2603 0.56 +0.5 2,769,072 + Dshi_2603 0.59 +0.0 2,769,208 - Dshi_2603 0.66 -1.1 2,769,439 - Dshi_2603 0.79 -0.3 2,769,515 - Dshi_2603 0.83 +0.1 2,769,524 - Dshi_2603 0.83 +1.6 2,769,554 - Dshi_2603 0.85 +0.6 2,769,555 + Dshi_2603 0.85 +0.5 2,769,556 + Dshi_2603 0.85 +0.2 2,769,561 + Dshi_2603 0.85 -2.0 2,769,707 + +0.3 2,769,715 - -1.7 2,769,717 + +0.5 2,769,745 - -0.4 2,769,760 - +0.9 2,769,804 - +0.0 2,769,822 + -0.9 2,769,944 - -0.2 2,770,029 + Dshi_2604 0.28 -0.9 2,770,350 + +3.0 2,770,363 - Dshi_2605 0.15 +0.3 2,770,445 - Dshi_2605 0.51 -0.7 2,770,470 - Dshi_2605 0.62 -0.2 2,770,507 + Dshi_2605 0.79 -0.1 2,770,617 - -0.8 2,770,645 - Dshi_2606 0.10 -0.7 2,770,740 - Dshi_2606 0.49 -1.2 2,770,796 - Dshi_2606 0.72 -1.2 2,770,902 - -0.8 2,770,956 + -0.7 2,770,958 + -0.5 2,770,980 + -0.8 2,770,980 + -0.2 2,770,988 - +0.5 2,770,988 - -0.6 2,771,001 + -1.9 2,771,156 + Dshi_2607 0.57 +1.5 2,771,183 + Dshi_2607 0.66 -1.4 2,771,193 + Dshi_2607 0.70 +0.6 2,771,223 + Dshi_2607 0.80 -3.3 2,771,255 - +0.5 2,771,287 + -0.5 2,771,290 - -1.7 2,771,305 - -0.4
Or see this region's nucleotide sequence