Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2604

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2603 and Dshi_2604 are separated by 84 nucleotidesDshi_2604 and Dshi_2605 are separated by 12 nucleotidesDshi_2605 and Dshi_2606 are separated by 65 nucleotidesDshi_2606 and Dshi_2607 are separated by 119 nucleotides Dshi_2603: Dshi_2603 - oligoendopeptidase, pepF/M3 family (RefSeq), at 2,767,996 to 2,769,831 _2603 Dshi_2604: Dshi_2604 - protein of unknown function DUF805 (RefSeq), at 2,769,916 to 2,770,317 _2604 Dshi_2605: Dshi_2605 - hypothetical protein (RefSeq), at 2,770,330 to 2,770,554 _2605 Dshi_2606: Dshi_2606 - zinc finger CDGSH-type domain protein (RefSeq), at 2,770,620 to 2,770,862 _2606 Dshi_2607: Dshi_2607 - hypothetical protein (RefSeq), at 2,770,982 to 2,771,284 _2607 Position (kb) 2769 2770 2771Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2768.934 kb on + strand, within Dshi_2603at 2768.961 kb on - strand, within Dshi_2603at 2768.961 kb on - strand, within Dshi_2603at 2769.025 kb on + strand, within Dshi_2603at 2769.072 kb on + strand, within Dshi_2603at 2769.208 kb on - strand, within Dshi_2603at 2769.439 kb on - strand, within Dshi_2603at 2769.515 kb on - strand, within Dshi_2603at 2769.524 kb on - strand, within Dshi_2603at 2769.554 kb on - strand, within Dshi_2603at 2769.555 kb on + strand, within Dshi_2603at 2769.556 kb on + strand, within Dshi_2603at 2769.561 kb on + strand, within Dshi_2603at 2769.707 kb on + strandat 2769.715 kb on - strandat 2769.717 kb on + strandat 2769.745 kb on - strandat 2769.760 kb on - strandat 2769.804 kb on - strandat 2769.822 kb on + strandat 2769.944 kb on - strandat 2770.029 kb on + strand, within Dshi_2604at 2770.350 kb on + strandat 2770.363 kb on - strand, within Dshi_2605at 2770.445 kb on - strand, within Dshi_2605at 2770.470 kb on - strand, within Dshi_2605at 2770.507 kb on + strand, within Dshi_2605at 2770.617 kb on - strandat 2770.645 kb on - strand, within Dshi_2606at 2770.740 kb on - strand, within Dshi_2606at 2770.796 kb on - strand, within Dshi_2606at 2770.902 kb on - strandat 2770.956 kb on + strandat 2770.958 kb on + strandat 2770.980 kb on + strandat 2770.980 kb on + strandat 2770.988 kb on - strandat 2770.988 kb on - strandat 2771.001 kb on + strandat 2771.156 kb on + strand, within Dshi_2607at 2771.183 kb on + strand, within Dshi_2607at 2771.193 kb on + strand, within Dshi_2607at 2771.223 kb on + strand, within Dshi_2607at 2771.255 kb on - strandat 2771.287 kb on + strandat 2771.290 kb on - strandat 2771.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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2,768,934 + Dshi_2603 0.51 +0.3
2,768,961 - Dshi_2603 0.53 +1.3
2,768,961 - Dshi_2603 0.53 -0.2
2,769,025 + Dshi_2603 0.56 +0.5
2,769,072 + Dshi_2603 0.59 +0.0
2,769,208 - Dshi_2603 0.66 -1.1
2,769,439 - Dshi_2603 0.79 -0.3
2,769,515 - Dshi_2603 0.83 +0.1
2,769,524 - Dshi_2603 0.83 +1.6
2,769,554 - Dshi_2603 0.85 +0.6
2,769,555 + Dshi_2603 0.85 +0.5
2,769,556 + Dshi_2603 0.85 +0.2
2,769,561 + Dshi_2603 0.85 -2.0
2,769,707 + +0.3
2,769,715 - -1.7
2,769,717 + +0.5
2,769,745 - -0.4
2,769,760 - +0.9
2,769,804 - +0.0
2,769,822 + -0.9
2,769,944 - -0.2
2,770,029 + Dshi_2604 0.28 -0.9
2,770,350 + +3.0
2,770,363 - Dshi_2605 0.15 +0.3
2,770,445 - Dshi_2605 0.51 -0.7
2,770,470 - Dshi_2605 0.62 -0.2
2,770,507 + Dshi_2605 0.79 -0.1
2,770,617 - -0.8
2,770,645 - Dshi_2606 0.10 -0.7
2,770,740 - Dshi_2606 0.49 -1.2
2,770,796 - Dshi_2606 0.72 -1.2
2,770,902 - -0.8
2,770,956 + -0.7
2,770,958 + -0.5
2,770,980 + -0.8
2,770,980 + -0.2
2,770,988 - +0.5
2,770,988 - -0.6
2,771,001 + -1.9
2,771,156 + Dshi_2607 0.57 +1.5
2,771,183 + Dshi_2607 0.66 -1.4
2,771,193 + Dshi_2607 0.70 +0.6
2,771,223 + Dshi_2607 0.80 -3.3
2,771,255 - +0.5
2,771,287 + -0.5
2,771,290 - -1.7
2,771,305 - -0.4

Or see this region's nucleotide sequence