Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2374 and Dshi_2375 are separated by 96 nucleotides Dshi_2375 and Dshi_2376 are separated by 24 nucleotides Dshi_2376 and Dshi_2377 are separated by 128 nucleotides
Dshi_2374: Dshi_2374 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,507,462 to 2,508,685
_2374
Dshi_2375: Dshi_2375 - protein of unknown function DUF1194 (RefSeq), at 2,508,782 to 2,509,588
_2375
Dshi_2376: Dshi_2376 - hypothetical protein (RefSeq), at 2,509,613 to 2,510,089
_2376
Dshi_2377: Dshi_2377 - protein of unknown function DUF839 (RefSeq), at 2,510,218 to 2,512,242
_2377
Position (kb)
2509
2510
2511 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2508.660 kb on - strand at 2508.702 kb on - strand at 2508.747 kb on - strand at 2508.837 kb on - strand at 2508.851 kb on - strand at 2508.966 kb on - strand, within Dshi_2375 at 2508.995 kb on + strand, within Dshi_2375 at 2509.003 kb on - strand, within Dshi_2375 at 2509.192 kb on + strand, within Dshi_2375 at 2509.198 kb on - strand, within Dshi_2375 at 2509.246 kb on + strand, within Dshi_2375 at 2509.369 kb on - strand, within Dshi_2375 at 2509.400 kb on + strand, within Dshi_2375 at 2509.601 kb on + strand at 2509.617 kb on - strand at 2509.691 kb on + strand, within Dshi_2376 at 2509.709 kb on - strand, within Dshi_2376 at 2509.745 kb on - strand, within Dshi_2376 at 2509.774 kb on + strand, within Dshi_2376 at 2509.774 kb on + strand, within Dshi_2376 at 2509.817 kb on - strand, within Dshi_2376 at 2509.869 kb on - strand, within Dshi_2376 at 2509.942 kb on + strand, within Dshi_2376 at 2510.059 kb on + strand at 2510.099 kb on - strand at 2510.109 kb on - strand at 2510.269 kb on - strand at 2510.277 kb on + strand at 2510.360 kb on - strand at 2510.439 kb on + strand, within Dshi_2377 at 2510.447 kb on - strand, within Dshi_2377 at 2510.447 kb on - strand, within Dshi_2377 at 2510.468 kb on - strand, within Dshi_2377 at 2510.471 kb on - strand, within Dshi_2377 at 2510.539 kb on + strand, within Dshi_2377 at 2510.681 kb on - strand, within Dshi_2377 at 2510.717 kb on - strand, within Dshi_2377 at 2510.722 kb on + strand, within Dshi_2377 at 2510.774 kb on + strand, within Dshi_2377 at 2510.782 kb on - strand, within Dshi_2377 at 2510.784 kb on + strand, within Dshi_2377 at 2510.792 kb on - strand, within Dshi_2377 at 2510.792 kb on - strand, within Dshi_2377 at 2510.812 kb on - strand, within Dshi_2377 at 2510.853 kb on + strand, within Dshi_2377 at 2510.866 kb on + strand, within Dshi_2377 at 2510.893 kb on + strand, within Dshi_2377 at 2510.898 kb on + strand, within Dshi_2377 at 2510.898 kb on + strand, within Dshi_2377 at 2510.898 kb on + strand, within Dshi_2377 at 2510.963 kb on - strand, within Dshi_2377 at 2511.022 kb on - strand, within Dshi_2377 at 2511.083 kb on - strand, within Dshi_2377 at 2511.088 kb on - strand, within Dshi_2377 at 2511.088 kb on - strand, within Dshi_2377
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 2,508,660 - -2.3 2,508,702 - -0.2 2,508,747 - +0.2 2,508,837 - -0.4 2,508,851 - -2.3 2,508,966 - Dshi_2375 0.23 -1.8 2,508,995 + Dshi_2375 0.26 -0.8 2,509,003 - Dshi_2375 0.27 -0.6 2,509,192 + Dshi_2375 0.51 +1.8 2,509,198 - Dshi_2375 0.52 -0.5 2,509,246 + Dshi_2375 0.57 -1.1 2,509,369 - Dshi_2375 0.73 -0.6 2,509,400 + Dshi_2375 0.77 -2.8 2,509,601 + -2.6 2,509,617 - -0.7 2,509,691 + Dshi_2376 0.16 -2.9 2,509,709 - Dshi_2376 0.20 +0.3 2,509,745 - Dshi_2376 0.28 -0.9 2,509,774 + Dshi_2376 0.34 +0.5 2,509,774 + Dshi_2376 0.34 -0.7 2,509,817 - Dshi_2376 0.43 -1.1 2,509,869 - Dshi_2376 0.54 -1.8 2,509,942 + Dshi_2376 0.69 -4.0 2,510,059 + -0.1 2,510,099 - +0.3 2,510,109 - -1.0 2,510,269 - +0.2 2,510,277 + +0.0 2,510,360 - -1.2 2,510,439 + Dshi_2377 0.11 +2.2 2,510,447 - Dshi_2377 0.11 +0.4 2,510,447 - Dshi_2377 0.11 +0.2 2,510,468 - Dshi_2377 0.12 -0.1 2,510,471 - Dshi_2377 0.12 +1.2 2,510,539 + Dshi_2377 0.16 +0.1 2,510,681 - Dshi_2377 0.23 -0.9 2,510,717 - Dshi_2377 0.25 +0.8 2,510,722 + Dshi_2377 0.25 +2.8 2,510,774 + Dshi_2377 0.27 +0.5 2,510,782 - Dshi_2377 0.28 -0.3 2,510,784 + Dshi_2377 0.28 -3.0 2,510,792 - Dshi_2377 0.28 +0.2 2,510,792 - Dshi_2377 0.28 -0.6 2,510,812 - Dshi_2377 0.29 -2.2 2,510,853 + Dshi_2377 0.31 +1.2 2,510,866 + Dshi_2377 0.32 -0.4 2,510,893 + Dshi_2377 0.33 -2.8 2,510,898 + Dshi_2377 0.34 +0.1 2,510,898 + Dshi_2377 0.34 -0.9 2,510,898 + Dshi_2377 0.34 -0.8 2,510,963 - Dshi_2377 0.37 -1.4 2,511,022 - Dshi_2377 0.40 -2.2 2,511,083 - Dshi_2377 0.43 +0.2 2,511,088 - Dshi_2377 0.43 -0.4 2,511,088 - Dshi_2377 0.43 -1.9
Or see this region's nucleotide sequence