Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2362 and Dshi_2363 are separated by 1 nucleotides Dshi_2363 and Dshi_2364 are separated by 361 nucleotides Dshi_2364 and Dshi_2365 are separated by 757 nucleotides
Dshi_2362: Dshi_2362 - Urease accessory protein UreF (RefSeq), at 2,496,198 to 2,496,830
_2362
Dshi_2363: Dshi_2363 - UreE urease accessory domain protein (RefSeq), at 2,496,832 to 2,497,314
_2363
Dshi_2364: Dshi_2364 - hypothetical protein (RefSeq), at 2,497,676 to 2,497,882
_2364
Dshi_2365: Dshi_2365 - urease, alpha subunit (RefSeq), at 2,498,640 to 2,500,349
_2365
Position (kb)
2497
2498 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2496.676 kb on + strand, within Dshi_2362 at 2496.676 kb on + strand, within Dshi_2362 at 2496.676 kb on + strand, within Dshi_2362 at 2496.688 kb on + strand, within Dshi_2362 at 2496.688 kb on + strand, within Dshi_2362 at 2496.746 kb on + strand, within Dshi_2362 at 2496.754 kb on - strand, within Dshi_2362 at 2496.854 kb on - strand at 2496.866 kb on - strand at 2496.897 kb on - strand, within Dshi_2363 at 2496.897 kb on - strand, within Dshi_2363 at 2497.069 kb on + strand, within Dshi_2363 at 2497.139 kb on - strand, within Dshi_2363 at 2497.166 kb on - strand, within Dshi_2363 at 2497.254 kb on + strand, within Dshi_2363 at 2497.399 kb on - strand at 2497.404 kb on - strand at 2497.428 kb on + strand at 2497.476 kb on - strand at 2497.483 kb on - strand at 2497.507 kb on + strand at 2497.507 kb on + strand at 2497.515 kb on - strand at 2497.561 kb on - strand at 2497.728 kb on + strand, within Dshi_2364 at 2497.745 kb on + strand, within Dshi_2364 at 2497.799 kb on - strand, within Dshi_2364 at 2497.915 kb on - strand at 2497.954 kb on + strand at 2498.121 kb on - strand at 2498.166 kb on - strand at 2498.195 kb on - strand at 2498.195 kb on - strand at 2498.385 kb on - strand at 2498.401 kb on - strand at 2498.489 kb on - strand at 2498.549 kb on + strand at 2498.567 kb on - strand at 2498.595 kb on - strand at 2498.600 kb on - strand at 2498.610 kb on - strand at 2498.658 kb on - strand at 2498.699 kb on - strand at 2498.717 kb on + strand at 2498.760 kb on + strand at 2498.789 kb on - strand at 2498.804 kb on - strand at 2498.833 kb on - strand, within Dshi_2365 at 2498.839 kb on - strand, within Dshi_2365
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 2,496,676 + Dshi_2362 0.76 -0.5 2,496,676 + Dshi_2362 0.76 +2.5 2,496,676 + Dshi_2362 0.76 -3.1 2,496,688 + Dshi_2362 0.77 -1.4 2,496,688 + Dshi_2362 0.77 -1.4 2,496,746 + Dshi_2362 0.87 -1.0 2,496,754 - Dshi_2362 0.88 -2.4 2,496,854 - -3.0 2,496,866 - -0.8 2,496,897 - Dshi_2363 0.13 -2.6 2,496,897 - Dshi_2363 0.13 +0.2 2,497,069 + Dshi_2363 0.49 -2.4 2,497,139 - Dshi_2363 0.64 +1.2 2,497,166 - Dshi_2363 0.69 -0.6 2,497,254 + Dshi_2363 0.87 -0.1 2,497,399 - -1.2 2,497,404 - -1.8 2,497,428 + +2.2 2,497,476 - +0.2 2,497,483 - -0.6 2,497,507 + -1.4 2,497,507 + +0.5 2,497,515 - +1.2 2,497,561 - -0.8 2,497,728 + Dshi_2364 0.25 -0.2 2,497,745 + Dshi_2364 0.33 +0.9 2,497,799 - Dshi_2364 0.59 +1.2 2,497,915 - +0.4 2,497,954 + -1.2 2,498,121 - +2.2 2,498,166 - -1.0 2,498,195 - -0.1 2,498,195 - -3.2 2,498,385 - -1.5 2,498,401 - -0.6 2,498,489 - +1.8 2,498,549 + +0.2 2,498,567 - +0.4 2,498,595 - +0.2 2,498,600 - -2.6 2,498,610 - -0.6 2,498,658 - -3.6 2,498,699 - -0.5 2,498,717 + +1.3 2,498,760 + -0.7 2,498,789 - -0.8 2,498,804 - -1.4 2,498,833 - Dshi_2365 0.11 -0.3 2,498,839 - Dshi_2365 0.12 -0.6
Or see this region's nucleotide sequence