Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2261 and Dshi_2262 are separated by 121 nucleotides Dshi_2262 and Dshi_2263 are separated by 55 nucleotides Dshi_2263 and Dshi_2264 overlap by 8 nucleotides
Dshi_2261: Dshi_2261 - RNA polymerase, sigma 70 subunit, RpoD family (RefSeq), at 2,381,601 to 2,383,595
_2261
Dshi_2262: Dshi_2262 - DNA primase (RefSeq), at 2,383,717 to 2,385,669
_2262
Dshi_2263: Dshi_2263 - sarcosine oxidase, gamma subunit, putative (RefSeq), at 2,385,725 to 2,386,303
_2263
Dshi_2264: Dshi_2264 - sarcosine oxidase, alpha subunit family (RefSeq), at 2,386,296 to 2,389,238
_2264
Position (kb)
2383
2384
2385
2386 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2383.689 kb on - strand at 2383.724 kb on - strand at 2385.779 kb on - strand at 2385.836 kb on + strand, within Dshi_2263 at 2385.847 kb on - strand, within Dshi_2263 at 2385.886 kb on + strand, within Dshi_2263 at 2385.900 kb on + strand, within Dshi_2263 at 2385.900 kb on + strand, within Dshi_2263 at 2385.908 kb on - strand, within Dshi_2263 at 2385.926 kb on - strand, within Dshi_2263 at 2385.931 kb on + strand, within Dshi_2263 at 2385.939 kb on + strand, within Dshi_2263 at 2386.037 kb on - strand, within Dshi_2263 at 2386.084 kb on - strand, within Dshi_2263 at 2386.086 kb on + strand, within Dshi_2263 at 2386.094 kb on - strand, within Dshi_2263 at 2386.094 kb on - strand, within Dshi_2263 at 2386.170 kb on - strand, within Dshi_2263 at 2386.191 kb on + strand, within Dshi_2263 at 2386.199 kb on - strand, within Dshi_2263 at 2386.199 kb on - strand, within Dshi_2263 at 2386.399 kb on - strand at 2386.407 kb on + strand at 2386.485 kb on - strand at 2386.490 kb on - strand at 2386.513 kb on - strand at 2386.526 kb on + strand at 2386.597 kb on - strand, within Dshi_2264 at 2386.599 kb on + strand, within Dshi_2264
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 2,383,689 - -1.0 2,383,724 - +0.6 2,385,779 - -0.3 2,385,836 + Dshi_2263 0.19 -1.2 2,385,847 - Dshi_2263 0.21 +2.2 2,385,886 + Dshi_2263 0.28 +1.0 2,385,900 + Dshi_2263 0.30 +0.2 2,385,900 + Dshi_2263 0.30 -0.1 2,385,908 - Dshi_2263 0.32 -1.7 2,385,926 - Dshi_2263 0.35 -1.1 2,385,931 + Dshi_2263 0.36 -0.0 2,385,939 + Dshi_2263 0.37 -0.9 2,386,037 - Dshi_2263 0.54 -0.6 2,386,084 - Dshi_2263 0.62 +0.5 2,386,086 + Dshi_2263 0.62 -2.9 2,386,094 - Dshi_2263 0.64 -1.1 2,386,094 - Dshi_2263 0.64 -0.6 2,386,170 - Dshi_2263 0.77 +3.0 2,386,191 + Dshi_2263 0.80 +1.5 2,386,199 - Dshi_2263 0.82 +0.6 2,386,199 - Dshi_2263 0.82 +1.2 2,386,399 - -0.2 2,386,407 + -2.8 2,386,485 - -0.3 2,386,490 - +1.4 2,386,513 - -0.9 2,386,526 + -0.4 2,386,597 - Dshi_2264 0.10 -1.9 2,386,599 + Dshi_2264 0.10 -0.5
Or see this region's nucleotide sequence