Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2146

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2145 and Dshi_2146 are separated by 75 nucleotidesDshi_2146 and Dshi_2147 are separated by 141 nucleotidesDshi_2147 and Dshi_2148 are separated by 153 nucleotides Dshi_2145: Dshi_2145 - Phosphopyruvate hydratase (RefSeq), at 2,274,839 to 2,276,113 _2145 Dshi_2146: Dshi_2146 - PRC-barrel domain protein (RefSeq), at 2,276,189 to 2,276,938 _2146 Dshi_2147: Dshi_2147 - hypothetical protein (RefSeq), at 2,277,080 to 2,277,499 _2147 Dshi_2148: Dshi_2148 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,277,653 to 2,278,543 _2148 Position (kb) 2276 2277Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2275.192 kb on + strand, within Dshi_2145at 2275.804 kb on + strand, within Dshi_2145at 2276.481 kb on + strand, within Dshi_2146at 2276.489 kb on - strand, within Dshi_2146at 2276.489 kb on - strand, within Dshi_2146at 2276.489 kb on - strand, within Dshi_2146at 2276.645 kb on + strand, within Dshi_2146at 2276.668 kb on - strand, within Dshi_2146at 2276.669 kb on + strand, within Dshi_2146at 2276.708 kb on + strand, within Dshi_2146at 2276.709 kb on - strand, within Dshi_2146at 2276.713 kb on + strand, within Dshi_2146at 2276.713 kb on + strand, within Dshi_2146at 2276.713 kb on + strand, within Dshi_2146at 2276.718 kb on + strand, within Dshi_2146at 2276.721 kb on - strand, within Dshi_2146at 2276.786 kb on + strand, within Dshi_2146at 2276.842 kb on - strand, within Dshi_2146at 2276.858 kb on + strand, within Dshi_2146at 2276.866 kb on - strandat 2276.866 kb on - strandat 2276.876 kb on - strandat 2276.897 kb on - strandat 2276.957 kb on - strandat 2277.176 kb on + strand, within Dshi_2147at 2277.177 kb on + strand, within Dshi_2147at 2277.226 kb on - strand, within Dshi_2147at 2277.366 kb on - strand, within Dshi_2147at 2277.418 kb on + strand, within Dshi_2147at 2277.453 kb on - strand, within Dshi_2147at 2277.479 kb on + strandat 2277.548 kb on + strandat 2277.616 kb on - strandat 2277.679 kb on - strandat 2277.686 kb on - strandat 2277.870 kb on + strand, within Dshi_2148at 2277.919 kb on - strand, within Dshi_2148

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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2,275,192 + Dshi_2145 0.28 +0.3
2,275,804 + Dshi_2145 0.76 -3.9
2,276,481 + Dshi_2146 0.39 -0.6
2,276,489 - Dshi_2146 0.40 -0.4
2,276,489 - Dshi_2146 0.40 +1.3
2,276,489 - Dshi_2146 0.40 -0.4
2,276,645 + Dshi_2146 0.61 +0.1
2,276,668 - Dshi_2146 0.64 -1.2
2,276,669 + Dshi_2146 0.64 -0.2
2,276,708 + Dshi_2146 0.69 +2.0
2,276,709 - Dshi_2146 0.69 +0.6
2,276,713 + Dshi_2146 0.70 +0.6
2,276,713 + Dshi_2146 0.70 -0.5
2,276,713 + Dshi_2146 0.70 +1.5
2,276,718 + Dshi_2146 0.71 +1.7
2,276,721 - Dshi_2146 0.71 +2.9
2,276,786 + Dshi_2146 0.80 +0.1
2,276,842 - Dshi_2146 0.87 +0.3
2,276,858 + Dshi_2146 0.89 +0.8
2,276,866 - -2.9
2,276,866 - -3.0
2,276,876 - +0.7
2,276,897 - +0.1
2,276,957 - -0.2
2,277,176 + Dshi_2147 0.23 -1.4
2,277,177 + Dshi_2147 0.23 -0.3
2,277,226 - Dshi_2147 0.35 +2.0
2,277,366 - Dshi_2147 0.68 -0.1
2,277,418 + Dshi_2147 0.80 -0.9
2,277,453 - Dshi_2147 0.89 +0.9
2,277,479 + +0.5
2,277,548 + -0.0
2,277,616 - +0.3
2,277,679 - -2.1
2,277,686 - +0.9
2,277,870 + Dshi_2148 0.24 +1.0
2,277,919 - Dshi_2148 0.30 -1.9

Or see this region's nucleotide sequence