Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2141
Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Tetracycline 0.006 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,270,390 | + | Dshi_2140 | 0.41 | -0.2 | |
2,270,494 | + | Dshi_2140 | 0.49 | -1.7 | |
2,270,494 | + | Dshi_2140 | 0.49 | -1.3 | |
2,270,502 | - | Dshi_2140 | 0.50 | +0.0 | |
2,270,510 | + | Dshi_2140 | 0.50 | -0.2 | |
2,270,561 | + | Dshi_2140 | 0.54 | -1.3 | |
2,270,582 | + | Dshi_2140 | 0.56 | -2.7 | |
2,270,638 | + | Dshi_2140 | 0.60 | -0.0 | |
2,270,646 | - | Dshi_2140 | 0.61 | -0.2 | |
2,270,678 | - | Dshi_2140 | 0.63 | +1.3 | |
2,271,068 | - | -1.4 | |||
2,271,081 | + | -0.5 | |||
2,271,163 | + | +1.5 | |||
2,271,324 | + | Dshi_2141 | 0.10 | +0.3 | |
2,271,502 | + | Dshi_2141 | 0.35 | -0.7 | |
2,271,590 | - | Dshi_2141 | 0.47 | -0.2 | |
2,271,766 | - | Dshi_2141 | 0.72 | -0.7 | |
2,271,821 | + | Dshi_2141 | 0.79 | -1.2 | |
2,271,821 | + | Dshi_2141 | 0.79 | -0.2 | |
2,272,250 | + | Dshi_2142 | 0.42 | -0.7 | |
2,272,252 | + | Dshi_2142 | 0.42 | -0.9 | |
2,272,314 | + | Dshi_2142 | 0.57 | -2.1 | |
2,272,509 | - | -0.3 | |||
2,272,647 | - | -0.7 | |||
2,272,728 | - | Dshi_2143 | 0.17 | -0.3 | |
2,272,738 | + | Dshi_2143 | 0.18 | -2.1 | |
2,272,792 | + | Dshi_2143 | 0.24 | +2.9 | |
2,272,959 | + | Dshi_2143 | 0.42 | -1.7 |
Or see this region's nucleotide sequence