Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2133

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2132 and Dshi_2133 overlap by 4 nucleotidesDshi_2133 and Dshi_2134 are separated by 209 nucleotidesDshi_2134 and Dshi_2135 are separated by 122 nucleotides Dshi_2132: Dshi_2132 - amidophosphoribosyltransferase (RefSeq), at 2,262,378 to 2,263,904 _2132 Dshi_2133: Dshi_2133 - protein of unknown function DUF1284 (RefSeq), at 2,263,901 to 2,264,419 _2133 Dshi_2134: Dshi_2134 - BioY protein (RefSeq), at 2,264,629 to 2,265,222 _2134 Dshi_2135: Dshi_2135 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,265,345 to 2,266,010 _2135 Position (kb) 2263 2264 2265Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2262.956 kb on - strand, within Dshi_2132at 2263.213 kb on + strand, within Dshi_2132at 2263.291 kb on + strand, within Dshi_2132at 2263.299 kb on - strand, within Dshi_2132at 2263.334 kb on - strand, within Dshi_2132at 2263.449 kb on - strand, within Dshi_2132at 2263.449 kb on - strand, within Dshi_2132at 2263.516 kb on - strand, within Dshi_2132at 2263.637 kb on - strand, within Dshi_2132at 2263.657 kb on + strand, within Dshi_2132at 2263.722 kb on + strand, within Dshi_2132at 2263.765 kb on - strandat 2263.863 kb on - strandat 2263.876 kb on + strandat 2263.942 kb on - strandat 2263.962 kb on - strand, within Dshi_2133at 2264.056 kb on - strand, within Dshi_2133at 2264.076 kb on + strand, within Dshi_2133at 2264.178 kb on + strand, within Dshi_2133at 2264.317 kb on - strand, within Dshi_2133at 2264.449 kb on + strandat 2264.449 kb on + strandat 2264.569 kb on + strandat 2264.813 kb on + strand, within Dshi_2134at 2265.205 kb on - strandat 2265.323 kb on - strandat 2265.329 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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2,262,956 - Dshi_2132 0.38 +1.3
2,263,213 + Dshi_2132 0.55 -0.7
2,263,291 + Dshi_2132 0.60 +2.9
2,263,299 - Dshi_2132 0.60 +2.3
2,263,334 - Dshi_2132 0.63 -1.2
2,263,449 - Dshi_2132 0.70 -2.2
2,263,449 - Dshi_2132 0.70 -0.7
2,263,516 - Dshi_2132 0.75 -1.3
2,263,637 - Dshi_2132 0.82 -0.1
2,263,657 + Dshi_2132 0.84 -0.8
2,263,722 + Dshi_2132 0.88 +0.3
2,263,765 - -0.3
2,263,863 - +0.9
2,263,876 + +0.7
2,263,942 - +3.5
2,263,962 - Dshi_2133 0.12 +0.9
2,264,056 - Dshi_2133 0.30 -0.9
2,264,076 + Dshi_2133 0.34 -0.3
2,264,178 + Dshi_2133 0.53 -2.5
2,264,317 - Dshi_2133 0.80 -1.6
2,264,449 + -0.0
2,264,449 + -0.5
2,264,569 + -0.7
2,264,813 + Dshi_2134 0.31 +0.3
2,265,205 - +0.3
2,265,323 - +0.8
2,265,329 + +0.3

Or see this region's nucleotide sequence