Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1885 and Dshi_1886 are separated by 7 nucleotides Dshi_1886 and Dshi_1887 are separated by 204 nucleotides Dshi_1887 and Dshi_1888 are separated by 97 nucleotides Dshi_1888 and Dshi_1889 overlap by 4 nucleotides
Dshi_1885: Dshi_1885 - monooxygenase FAD-binding (RefSeq), at 1,962,221 to 1,963,390
_1885
Dshi_1886: Dshi_1886 - exodeoxyribonuclease III Xth (RefSeq), at 1,963,398 to 1,964,177
_1886
Dshi_1887: Dshi_1887 - ribonuclease D (RefSeq), at 1,964,382 to 1,965,539
_1887
Dshi_1888: Dshi_1888 - phosphoribosylglycinamide formyltransferase (RefSeq), at 1,965,637 to 1,966,230
_1888
Dshi_1889: Dshi_1889 - phosphoribosylformylglycinamidine cyclo-ligase (RefSeq), at 1,966,227 to 1,967,288
_1889
Position (kb) 1964
1965
1966 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1963.387 kb on - strand at 1963.447 kb on - strand at 1963.482 kb on + strand, within Dshi_1886 at 1963.495 kb on - strand, within Dshi_1886 at 1963.911 kb on + strand, within Dshi_1886 at 1964.020 kb on + strand, within Dshi_1886 at 1964.028 kb on - strand, within Dshi_1886 at 1964.116 kb on - strand at 1964.118 kb on + strand at 1964.223 kb on + strand at 1964.312 kb on + strand at 1964.601 kb on - strand, within Dshi_1887 at 1964.676 kb on + strand, within Dshi_1887 at 1964.690 kb on - strand at 1964.973 kb on - strand, within Dshi_1887 at 1965.091 kb on + strand, within Dshi_1887 at 1965.287 kb on - strand, within Dshi_1887 at 1965.316 kb on - strand, within Dshi_1887 at 1965.532 kb on - strand at 1965.810 kb on + strand, within Dshi_1888 at 1965.821 kb on + strand, within Dshi_1888 at 1965.829 kb on - strand, within Dshi_1888 at 1965.859 kb on + strand, within Dshi_1888 at 1966.204 kb on + strand at 1966.391 kb on + strand, within Dshi_1889
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 1,963,387 - +0.1 1,963,447 - +0.1 1,963,482 + Dshi_1886 0.11 -0.6 1,963,495 - Dshi_1886 0.12 -0.7 1,963,911 + Dshi_1886 0.66 +2.4 1,964,020 + Dshi_1886 0.80 -0.1 1,964,028 - Dshi_1886 0.81 +2.4 1,964,116 - +1.8 1,964,118 + -0.1 1,964,223 + -1.1 1,964,312 + +0.4 1,964,601 - Dshi_1887 0.19 -1.6 1,964,676 + Dshi_1887 0.25 -3.0 1,964,690 - -0.6 1,964,973 - Dshi_1887 0.51 -2.7 1,965,091 + Dshi_1887 0.61 -1.3 1,965,287 - Dshi_1887 0.78 +0.1 1,965,316 - Dshi_1887 0.81 +0.4 1,965,532 - +0.4 1,965,810 + Dshi_1888 0.29 -0.7 1,965,821 + Dshi_1888 0.31 +0.6 1,965,829 - Dshi_1888 0.32 +2.0 1,965,859 + Dshi_1888 0.37 +1.4 1,966,204 + +1.4 1,966,391 + Dshi_1889 0.15 -0.6
Or see this region's nucleotide sequence