Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1817

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1816 and Dshi_1817 are separated by 222 nucleotidesDshi_1817 and Dshi_1818 are separated by 71 nucleotidesDshi_1818 and Dshi_1819 are separated by 100 nucleotides Dshi_1816: Dshi_1816 - MscS Mechanosensitive ion channel (RefSeq), at 1,894,133 to 1,895,479 _1816 Dshi_1817: Dshi_1817 - Pirin domain protein (RefSeq), at 1,895,702 to 1,896,640 _1817 Dshi_1818: Dshi_1818 - hypothetical protein (RefSeq), at 1,896,712 to 1,896,984 _1818 Dshi_1819: Dshi_1819 - transcriptional regulator, LuxR family (RefSeq), at 1,897,085 to 1,897,816 _1819 Position (kb) 1895 1896 1897Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1894.921 kb on - strand, within Dshi_1816at 1894.982 kb on - strand, within Dshi_1816at 1895.108 kb on + strand, within Dshi_1816at 1895.116 kb on - strand, within Dshi_1816at 1895.272 kb on + strand, within Dshi_1816at 1895.454 kb on + strandat 1895.496 kb on + strandat 1895.614 kb on + strandat 1895.672 kb on + strandat 1895.844 kb on - strand, within Dshi_1817at 1895.862 kb on - strand, within Dshi_1817at 1895.876 kb on - strand, within Dshi_1817at 1895.984 kb on + strand, within Dshi_1817at 1896.063 kb on + strand, within Dshi_1817at 1896.066 kb on - strand, within Dshi_1817at 1896.081 kb on - strand, within Dshi_1817at 1896.103 kb on + strand, within Dshi_1817at 1896.218 kb on - strand, within Dshi_1817at 1896.218 kb on - strand, within Dshi_1817at 1896.301 kb on - strand, within Dshi_1817at 1896.535 kb on + strand, within Dshi_1817at 1896.644 kb on + strandat 1896.665 kb on + strandat 1896.913 kb on - strand, within Dshi_1818at 1896.921 kb on - strand, within Dshi_1818at 1896.960 kb on - strandat 1897.153 kb on - strandat 1897.236 kb on + strand, within Dshi_1819at 1897.244 kb on - strand, within Dshi_1819at 1897.270 kb on - strand, within Dshi_1819at 1897.270 kb on - strand, within Dshi_1819at 1897.320 kb on + strand, within Dshi_1819at 1897.445 kb on + strand, within Dshi_1819at 1897.466 kb on + strand, within Dshi_1819at 1897.474 kb on - strand, within Dshi_1819at 1897.596 kb on + strand, within Dshi_1819

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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1,894,921 - Dshi_1816 0.59 -0.9
1,894,982 - Dshi_1816 0.63 -1.4
1,895,108 + Dshi_1816 0.72 +2.7
1,895,116 - Dshi_1816 0.73 -2.8
1,895,272 + Dshi_1816 0.85 +0.4
1,895,454 + -2.9
1,895,496 + +0.8
1,895,614 + +0.4
1,895,672 + -2.3
1,895,844 - Dshi_1817 0.15 +0.4
1,895,862 - Dshi_1817 0.17 -1.9
1,895,876 - Dshi_1817 0.19 +0.4
1,895,984 + Dshi_1817 0.30 -2.4
1,896,063 + Dshi_1817 0.38 -0.6
1,896,066 - Dshi_1817 0.39 +1.1
1,896,081 - Dshi_1817 0.40 +0.4
1,896,103 + Dshi_1817 0.43 -1.8
1,896,218 - Dshi_1817 0.55 +2.4
1,896,218 - Dshi_1817 0.55 -0.6
1,896,301 - Dshi_1817 0.64 +0.4
1,896,535 + Dshi_1817 0.89 +0.4
1,896,644 + -0.4
1,896,665 + -1.1
1,896,913 - Dshi_1818 0.74 -0.2
1,896,921 - Dshi_1818 0.77 +0.4
1,896,960 - +2.0
1,897,153 - +0.4
1,897,236 + Dshi_1819 0.21 +2.7
1,897,244 - Dshi_1819 0.22 +2.0
1,897,270 - Dshi_1819 0.25 -0.2
1,897,270 - Dshi_1819 0.25 +0.6
1,897,320 + Dshi_1819 0.32 +2.7
1,897,445 + Dshi_1819 0.49 -0.2
1,897,466 + Dshi_1819 0.52 -2.4
1,897,474 - Dshi_1819 0.53 -0.6
1,897,596 + Dshi_1819 0.70 +0.4

Or see this region's nucleotide sequence