Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1789 and Dshi_1790 are separated by 104 nucleotides Dshi_1790 and Dshi_1791 are separated by 1 nucleotides Dshi_1791 and Dshi_1792 overlap by 4 nucleotides Dshi_1792 and Dshi_1793 are separated by 62 nucleotides
Dshi_1789: Dshi_1789 - Pyridoxal 5'-phosphate synthase (RefSeq), at 1,860,527 to 1,861,132
_1789
Dshi_1790: Dshi_1790 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,861,237 to 1,862,055
_1790
Dshi_1791: Dshi_1791 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,862,057 to 1,862,668
_1791
Dshi_1792: Dshi_1792 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,862,665 to 1,863,276
_1792
Dshi_1793: Dshi_1793 - Xanthine phosphoribosyltransferase (RefSeq), at 1,863,339 to 1,863,842
_1793
Position (kb)
1862
1863 Strain fitness (log2 ratio)
-2
-1
0
1 at 1861.149 kb on - strand at 1862.064 kb on - strand at 1862.192 kb on - strand, within Dshi_1791 at 1862.194 kb on + strand, within Dshi_1791 at 1862.228 kb on + strand, within Dshi_1791 at 1862.431 kb on + strand, within Dshi_1791 at 1862.439 kb on - strand, within Dshi_1791 at 1862.511 kb on - strand, within Dshi_1791 at 1862.540 kb on - strand, within Dshi_1791 at 1862.768 kb on + strand, within Dshi_1792 at 1863.005 kb on + strand, within Dshi_1792 at 1863.092 kb on + strand, within Dshi_1792 at 1863.182 kb on + strand, within Dshi_1792 at 1863.190 kb on - strand, within Dshi_1792 at 1863.193 kb on + strand, within Dshi_1792 at 1863.238 kb on + strand at 1863.567 kb on - strand, within Dshi_1793
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 1,861,149 - -0.8 1,862,064 - -0.9 1,862,192 - Dshi_1791 0.22 -1.4 1,862,194 + Dshi_1791 0.22 -0.7 1,862,228 + Dshi_1791 0.28 -0.7 1,862,431 + Dshi_1791 0.61 +0.3 1,862,439 - Dshi_1791 0.62 -0.7 1,862,511 - Dshi_1791 0.74 +0.3 1,862,540 - Dshi_1791 0.79 +0.3 1,862,768 + Dshi_1792 0.17 -2.2 1,863,005 + Dshi_1792 0.56 -0.3 1,863,092 + Dshi_1792 0.70 +0.4 1,863,182 + Dshi_1792 0.84 -1.3 1,863,190 - Dshi_1792 0.86 +1.3 1,863,193 + Dshi_1792 0.86 -1.0 1,863,238 + +0.3 1,863,567 - Dshi_1793 0.45 +0.3
Or see this region's nucleotide sequence