Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1745

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1743 and Dshi_1744 are separated by 331 nucleotidesDshi_1744 and Dshi_1745 are separated by 88 nucleotidesDshi_1745 and Dshi_1746 are separated by 52 nucleotides Dshi_1743: Dshi_1743 - GCN5-related N-acetyltransferase (RefSeq), at 1,809,314 to 1,809,916 _1743 Dshi_1744: Dshi_1744 - pantetheine-phosphate adenylyltransferase (RefSeq), at 1,810,248 to 1,810,763 _1744 Dshi_1745: Dshi_1745 - putative signal-transduction protein with CBS domains (RefSeq), at 1,810,852 to 1,811,286 _1745 Dshi_1746: Dshi_1746 - transcriptional regulator, LysR family (RefSeq), at 1,811,339 to 1,812,232 _1746 Position (kb) 1810 1811 1812Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1809.948 kb on + strandat 1810.822 kb on + strandat 1810.827 kb on + strandat 1810.830 kb on - strandat 1810.841 kb on - strandat 1811.038 kb on + strand, within Dshi_1745at 1811.108 kb on - strand, within Dshi_1745at 1811.182 kb on - strand, within Dshi_1745at 1811.290 kb on - strandat 1811.316 kb on - strandat 1811.324 kb on + strandat 1811.767 kb on - strand, within Dshi_1746at 1811.781 kb on + strand, within Dshi_1746at 1811.799 kb on - strand, within Dshi_1746at 1811.831 kb on + strand, within Dshi_1746at 1811.935 kb on - strand, within Dshi_1746at 1811.962 kb on + strand, within Dshi_1746at 1812.221 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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1,809,948 + -0.9
1,810,822 + -0.7
1,810,827 + -0.9
1,810,830 - -0.7
1,810,841 - +0.5
1,811,038 + Dshi_1745 0.43 -0.4
1,811,108 - Dshi_1745 0.59 -1.9
1,811,182 - Dshi_1745 0.76 +0.5
1,811,290 - +1.6
1,811,316 - -3.7
1,811,324 + -0.0
1,811,767 - Dshi_1746 0.48 -1.0
1,811,781 + Dshi_1746 0.49 +2.6
1,811,799 - Dshi_1746 0.51 -0.9
1,811,831 + Dshi_1746 0.55 +0.3
1,811,935 - Dshi_1746 0.67 -1.1
1,811,962 + Dshi_1746 0.70 +1.0
1,812,221 + +1.0

Or see this region's nucleotide sequence