Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1731

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1729 and Dshi_1730 are separated by 43 nucleotidesDshi_1730 and Dshi_1731 are separated by 62 nucleotidesDshi_1731 and Dshi_1732 are separated by 254 nucleotides Dshi_1729: Dshi_1729 - putative deoxyguanosinetriphosphate triphosphohydrolase (RefSeq), at 1,796,409 to 1,797,608 _1729 Dshi_1730: Dshi_1730 - iron-sulfur cluster assembly accessory protein (RefSeq), at 1,797,652 to 1,797,984 _1730 Dshi_1731: Dshi_1731 - hypothetical protein (RefSeq), at 1,798,047 to 1,798,658 _1731 Dshi_1732: Dshi_1732 - modification methylase, HemK family (RefSeq), at 1,798,913 to 1,799,737 _1732 Position (kb) 1798 1799Strain fitness (log2 ratio) -2 -1 0 1at 1797.077 kb on - strand, within Dshi_1729at 1797.130 kb on - strand, within Dshi_1729at 1797.151 kb on - strand, within Dshi_1729at 1797.260 kb on - strand, within Dshi_1729at 1797.307 kb on + strand, within Dshi_1729at 1797.317 kb on + strand, within Dshi_1729at 1797.358 kb on + strand, within Dshi_1729at 1797.358 kb on + strand, within Dshi_1729at 1797.368 kb on + strand, within Dshi_1729at 1797.437 kb on - strand, within Dshi_1729at 1798.281 kb on - strand, within Dshi_1731

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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1,797,077 - Dshi_1729 0.56 +0.3
1,797,130 - Dshi_1729 0.60 -1.2
1,797,151 - Dshi_1729 0.62 -1.3
1,797,260 - Dshi_1729 0.71 -2.7
1,797,307 + Dshi_1729 0.75 +0.3
1,797,317 + Dshi_1729 0.76 -1.1
1,797,358 + Dshi_1729 0.79 +0.3
1,797,358 + Dshi_1729 0.79 -2.1
1,797,368 + Dshi_1729 0.80 -2.2
1,797,437 - Dshi_1729 0.86 -0.2
1,798,281 - Dshi_1731 0.38 +0.8

Or see this region's nucleotide sequence