Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1715 and Dshi_1716 overlap by 4 nucleotides Dshi_1716 and Dshi_1717 are separated by 200 nucleotides Dshi_1717 and Dshi_1718 are separated by 223 nucleotides Dshi_1718 and Dshi_1719 are separated by 35 nucleotides
Dshi_1715: Dshi_1715 - sulfotransferase (RefSeq), at 1,783,558 to 1,784,403
_1715
Dshi_1716: Dshi_1716 - hypothetical protein (RefSeq), at 1,784,400 to 1,784,858
_1716
Dshi_1717: Dshi_1717 - hypothetical protein (RefSeq), at 1,785,059 to 1,785,622
_1717
Dshi_1718: Dshi_1718 - ribosomal protein L32 (RefSeq), at 1,785,846 to 1,786,052
_1718
Dshi_1719: Dshi_1719 - fatty acid/phospholipid synthesis protein PlsX (RefSeq), at 1,786,088 to 1,787,245
_1719
Position (kb) 1785
1786 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1784.158 kb on - strand, within Dshi_1715 at 1784.276 kb on - strand, within Dshi_1715 at 1784.365 kb on + strand at 1784.379 kb on - strand at 1784.379 kb on - strand at 1785.509 kb on - strand, within Dshi_1717 at 1785.521 kb on + strand, within Dshi_1717 at 1785.535 kb on + strand, within Dshi_1717 at 1785.660 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 1,784,158 - Dshi_1715 0.71 -2.2 1,784,276 - Dshi_1715 0.85 -0.3 1,784,365 + +0.5 1,784,379 - -0.6 1,784,379 - -1.1 1,785,509 - Dshi_1717 0.80 +1.3 1,785,521 + Dshi_1717 0.82 -2.7 1,785,535 + Dshi_1717 0.84 -2.4 1,785,660 + -3.4
Or see this region's nucleotide sequence