Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1687 and Dshi_1688 are separated by 189 nucleotides Dshi_1688 and Dshi_1689 overlap by 4 nucleotides Dshi_1689 and Dshi_1690 overlap by 19 nucleotides Dshi_1690 and Dshi_1691 overlap by 4 nucleotides
Dshi_1687: Dshi_1687 - HNH endonuclease (RefSeq), at 1,756,672 to 1,757,268
_1687
Dshi_1688: Dshi_1688 - phospholipase/Carboxylesterase (RefSeq), at 1,757,458 to 1,758,129
_1688
Dshi_1689: Dshi_1689 - HhH-GPD family protein (RefSeq), at 1,758,126 to 1,758,758
_1689
Dshi_1690: Dshi_1690 - precorrin-6x reductase (RefSeq), at 1,758,740 to 1,759,486
_1690
Dshi_1691: Dshi_1691 - cobalamin (vitamin B12) biosynthesis CbiD protein (RefSeq), at 1,759,483 to 1,760,532
_1691
Position (kb)
1758
1759 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1757.129 kb on - strand, within Dshi_1687 at 1757.360 kb on + strand at 1758.111 kb on + strand at 1758.227 kb on + strand, within Dshi_1689 at 1758.342 kb on - strand, within Dshi_1689 at 1758.363 kb on + strand, within Dshi_1689 at 1758.403 kb on - strand, within Dshi_1689 at 1758.487 kb on - strand, within Dshi_1689 at 1758.489 kb on + strand, within Dshi_1689 at 1758.532 kb on + strand, within Dshi_1689 at 1758.625 kb on - strand, within Dshi_1689 at 1758.625 kb on - strand, within Dshi_1689 at 1758.696 kb on + strand at 1758.731 kb on - strand at 1758.773 kb on - strand at 1758.776 kb on + strand at 1758.776 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 1,757,129 - Dshi_1687 0.77 -0.7 1,757,360 + +0.2 1,758,111 + +1.9 1,758,227 + Dshi_1689 0.16 -0.7 1,758,342 - Dshi_1689 0.34 -0.0 1,758,363 + Dshi_1689 0.37 -1.3 1,758,403 - Dshi_1689 0.44 -1.3 1,758,487 - Dshi_1689 0.57 +0.5 1,758,489 + Dshi_1689 0.57 +2.3 1,758,532 + Dshi_1689 0.64 -1.3 1,758,625 - Dshi_1689 0.79 -0.9 1,758,625 - Dshi_1689 0.79 -0.1 1,758,696 + +2.2 1,758,731 - -0.0 1,758,773 - -2.3 1,758,776 + +0.3 1,758,776 + -1.6
Or see this region's nucleotide sequence