Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1595 and Dshi_1596 overlap by 8 nucleotides Dshi_1596 and Dshi_1597 are separated by 14 nucleotides Dshi_1597 and Dshi_1598 overlap by 4 nucleotides Dshi_1598 and Dshi_1599 overlap by 4 nucleotides
Dshi_1595: Dshi_1595 - protein of unknown function DUF344 (RefSeq), at 1,661,362 to 1,662,231
_1595
Dshi_1596: Dshi_1596 - transcriptional regulator, TetR family (RefSeq), at 1,662,224 to 1,662,841
_1596
Dshi_1597: Dshi_1597 - ABC transporter related (RefSeq), at 1,662,856 to 1,663,923
_1597
Dshi_1598: Dshi_1598 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,663,920 to 1,664,726
_1598
Dshi_1599: Dshi_1599 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,664,723 to 1,665,604
_1599
Position (kb)
1662
1663
1664 Strain fitness (log2 ratio)
-2
-1
0
1 at 1661.896 kb on - strand, within Dshi_1595 at 1662.146 kb on - strand at 1662.172 kb on - strand at 1662.206 kb on - strand at 1662.312 kb on + strand, within Dshi_1596 at 1662.474 kb on - strand, within Dshi_1596 at 1662.474 kb on - strand, within Dshi_1596 at 1662.497 kb on + strand, within Dshi_1596 at 1662.579 kb on + strand, within Dshi_1596 at 1662.625 kb on - strand, within Dshi_1596 at 1662.625 kb on - strand, within Dshi_1596 at 1662.935 kb on + strand at 1663.045 kb on - strand, within Dshi_1597 at 1663.146 kb on - strand, within Dshi_1597 at 1663.324 kb on + strand, within Dshi_1597 at 1663.444 kb on - strand, within Dshi_1597 at 1663.511 kb on - strand, within Dshi_1597 at 1663.602 kb on + strand, within Dshi_1597 at 1663.610 kb on - strand, within Dshi_1597 at 1663.818 kb on - strand at 1663.914 kb on - strand at 1664.096 kb on + strand, within Dshi_1598 at 1664.579 kb on + strand, within Dshi_1598 at 1664.684 kb on - strand at 1664.910 kb on - strand, within Dshi_1599
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 1,661,896 - Dshi_1595 0.61 -0.6 1,662,146 - +1.2 1,662,172 - -0.4 1,662,206 - -0.6 1,662,312 + Dshi_1596 0.14 +0.4 1,662,474 - Dshi_1596 0.40 +0.9 1,662,474 - Dshi_1596 0.40 -0.2 1,662,497 + Dshi_1596 0.44 -1.3 1,662,579 + Dshi_1596 0.57 -0.7 1,662,625 - Dshi_1596 0.65 +0.5 1,662,625 - Dshi_1596 0.65 -0.8 1,662,935 + +0.8 1,663,045 - Dshi_1597 0.18 -0.2 1,663,146 - Dshi_1597 0.27 -0.4 1,663,324 + Dshi_1597 0.44 -2.1 1,663,444 - Dshi_1597 0.55 +0.8 1,663,511 - Dshi_1597 0.61 +0.8 1,663,602 + Dshi_1597 0.70 -1.6 1,663,610 - Dshi_1597 0.71 -0.8 1,663,818 - -1.1 1,663,914 - -0.3 1,664,096 + Dshi_1598 0.22 +0.2 1,664,579 + Dshi_1598 0.82 -2.1 1,664,684 - -1.6 1,664,910 - Dshi_1599 0.21 -0.5
Or see this region's nucleotide sequence