Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1550 and Dshi_1551 overlap by 4 nucleotides Dshi_1551 and Dshi_1552 are separated by 174 nucleotides Dshi_1552 and Dshi_1553 overlap by 4 nucleotides Dshi_1553 and Dshi_1554 overlap by 4 nucleotides
Dshi_1550: Dshi_1550 - transcriptional regulator, LuxR family (RefSeq), at 1,613,091 to 1,613,873
_1550
Dshi_1551: Dshi_1551 - 3-dehydroquinate dehydratase, type II (RefSeq), at 1,613,870 to 1,614,322
_1551
Dshi_1552: Dshi_1552 - type III effector Hrp-dependent outers (RefSeq), at 1,614,497 to 1,615,753
_1552
Dshi_1553: Dshi_1553 - class II aldolase/adducin family protein (RefSeq), at 1,615,750 to 1,616,400
_1553
Dshi_1554: Dshi_1554 - Hydroxypyruvate isomerase (RefSeq), at 1,616,397 to 1,617,161
_1554
Position (kb)
1614
1615
1616 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1613.665 kb on + strand, within Dshi_1550 at 1613.665 kb on - strand, within Dshi_1550 at 1613.826 kb on - strand at 1613.848 kb on + strand at 1613.869 kb on + strand at 1614.453 kb on + strand at 1614.463 kb on - strand at 1614.506 kb on + strand at 1614.597 kb on - strand at 1614.698 kb on + strand, within Dshi_1552 at 1614.964 kb on - strand, within Dshi_1552 at 1615.203 kb on - strand, within Dshi_1552 at 1615.404 kb on - strand, within Dshi_1552 at 1615.422 kb on - strand, within Dshi_1552 at 1615.746 kb on + strand at 1615.762 kb on - strand at 1616.163 kb on + strand, within Dshi_1553 at 1616.185 kb on + strand, within Dshi_1553 at 1616.204 kb on + strand, within Dshi_1553 at 1616.386 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 1,613,665 + Dshi_1550 0.73 -0.8 1,613,665 - Dshi_1550 0.73 -0.7 1,613,826 - +1.5 1,613,848 + +0.2 1,613,869 + -1.0 1,614,453 + -1.4 1,614,463 - -2.9 1,614,506 + +3.0 1,614,597 - -0.6 1,614,698 + Dshi_1552 0.16 -0.7 1,614,964 - Dshi_1552 0.37 -1.8 1,615,203 - Dshi_1552 0.56 +0.2 1,615,404 - Dshi_1552 0.72 -2.1 1,615,422 - Dshi_1552 0.74 -0.8 1,615,746 + -1.8 1,615,762 - -2.2 1,616,163 + Dshi_1553 0.63 +0.7 1,616,185 + Dshi_1553 0.67 -0.4 1,616,204 + Dshi_1553 0.70 +0.9 1,616,386 + -3.3
Or see this region's nucleotide sequence