Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1491 and Dshi_1492 are separated by 58 nucleotides Dshi_1492 and Dshi_1493 are separated by 109 nucleotides Dshi_1493 and Dshi_1494 are separated by 130 nucleotides
Dshi_1491: Dshi_1491 - transcriptional regulator, AraC family (RefSeq), at 1,550,866 to 1,551,678
_1491
Dshi_1492: Dshi_1492 - tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq), at 1,551,737 to 1,552,627
_1492
Dshi_1493: Dshi_1493 - uridylate kinase (RefSeq), at 1,552,737 to 1,553,468
_1493
Dshi_1494: Dshi_1494 - ribosome recycling factor (RefSeq), at 1,553,599 to 1,554,165
_1494
Position (kb)
1551
1552
1553 Strain fitness (log2 ratio)
-2
-1
0
1 at 1550.824 kb on - strand at 1551.082 kb on + strand, within Dshi_1491 at 1551.124 kb on - strand, within Dshi_1491 at 1551.248 kb on - strand, within Dshi_1491 at 1551.262 kb on + strand, within Dshi_1491 at 1551.274 kb on + strand, within Dshi_1491 at 1551.616 kb on + strand at 1551.625 kb on - strand at 1551.716 kb on - strand at 1553.462 kb on + strand at 1553.500 kb on + strand at 1553.500 kb on + strand at 1553.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 1,550,824 - +1.0 1,551,082 + Dshi_1491 0.27 -1.3 1,551,124 - Dshi_1491 0.32 -1.3 1,551,248 - Dshi_1491 0.47 +0.2 1,551,262 + Dshi_1491 0.49 -1.7 1,551,274 + Dshi_1491 0.50 -1.3 1,551,616 + -2.6 1,551,625 - +0.2 1,551,716 - -1.0 1,553,462 + -1.3 1,553,500 + -2.4 1,553,500 + -0.1 1,553,532 - -0.4
Or see this region's nucleotide sequence