Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1411 and Dshi_1412 are separated by 38 nucleotides Dshi_1412 and Dshi_1413 are separated by 424 nucleotides Dshi_1413 and Dshi_1414 are separated by 60 nucleotides
Dshi_1411: Dshi_1411 - transcriptional regulator, TraR/DksA family (RefSeq), at 1,465,574 to 1,465,852
_1411
Dshi_1412: Dshi_1412 - hypothetical protein (RefSeq), at 1,465,891 to 1,466,133
_1412
Dshi_1413: Dshi_1413 - extracellular solute-binding protein family 1 (RefSeq), at 1,466,558 to 1,467,793
_1413
Dshi_1414: Dshi_1414 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,467,854 to 1,468,885
_1414
Position (kb)
1466
1467
1468 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1465.656 kb on - strand, within Dshi_1411 at 1465.698 kb on + strand, within Dshi_1411 at 1465.717 kb on + strand, within Dshi_1411 at 1465.769 kb on + strand, within Dshi_1411 at 1465.841 kb on + strand at 1465.847 kb on + strand at 1465.855 kb on - strand at 1466.016 kb on + strand, within Dshi_1412 at 1466.135 kb on - strand at 1466.281 kb on - strand at 1466.360 kb on - strand at 1466.395 kb on + strand at 1466.470 kb on + strand at 1466.626 kb on - strand at 1466.633 kb on - strand at 1466.899 kb on - strand, within Dshi_1413 at 1466.904 kb on - strand, within Dshi_1413 at 1466.914 kb on + strand, within Dshi_1413 at 1467.013 kb on + strand, within Dshi_1413 at 1467.021 kb on + strand, within Dshi_1413 at 1467.642 kb on + strand, within Dshi_1413 at 1467.642 kb on + strand, within Dshi_1413 at 1467.735 kb on + strand at 1467.751 kb on + strand at 1467.876 kb on + strand at 1468.065 kb on - strand, within Dshi_1414 at 1468.180 kb on - strand, within Dshi_1414 at 1468.209 kb on + strand, within Dshi_1414 at 1468.209 kb on + strand, within Dshi_1414 at 1468.210 kb on - strand, within Dshi_1414 at 1468.217 kb on - strand, within Dshi_1414 at 1468.217 kb on - strand, within Dshi_1414 at 1468.218 kb on + strand, within Dshi_1414 at 1468.248 kb on + strand, within Dshi_1414 at 1468.330 kb on - strand, within Dshi_1414 at 1468.397 kb on - strand, within Dshi_1414 at 1468.443 kb on + strand, within Dshi_1414 at 1468.451 kb on - strand, within Dshi_1414 at 1468.460 kb on + strand, within Dshi_1414 at 1468.616 kb on + strand, within Dshi_1414 at 1468.626 kb on + strand, within Dshi_1414 at 1468.665 kb on - strand, within Dshi_1414 at 1468.750 kb on - strand, within Dshi_1414
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 1,465,656 - Dshi_1411 0.29 -0.8 1,465,698 + Dshi_1411 0.44 +2.0 1,465,717 + Dshi_1411 0.51 -2.2 1,465,769 + Dshi_1411 0.70 -2.8 1,465,841 + +1.1 1,465,847 + +0.4 1,465,855 - +0.4 1,466,016 + Dshi_1412 0.51 -1.0 1,466,135 - +0.4 1,466,281 - +1.4 1,466,360 - -2.2 1,466,395 + +0.3 1,466,470 + -0.6 1,466,626 - +2.4 1,466,633 - -0.8 1,466,899 - Dshi_1413 0.28 +2.4 1,466,904 - Dshi_1413 0.28 -0.0 1,466,914 + Dshi_1413 0.29 -0.8 1,467,013 + Dshi_1413 0.37 +1.6 1,467,021 + Dshi_1413 0.37 -2.4 1,467,642 + Dshi_1413 0.88 -1.0 1,467,642 + Dshi_1413 0.88 -2.9 1,467,735 + +0.7 1,467,751 + -0.9 1,467,876 + -1.2 1,468,065 - Dshi_1414 0.20 -1.2 1,468,180 - Dshi_1414 0.32 -0.4 1,468,209 + Dshi_1414 0.34 +0.8 1,468,209 + Dshi_1414 0.34 +0.6 1,468,210 - Dshi_1414 0.34 -1.4 1,468,217 - Dshi_1414 0.35 -0.5 1,468,217 - Dshi_1414 0.35 +0.6 1,468,218 + Dshi_1414 0.35 -1.2 1,468,248 + Dshi_1414 0.38 +0.4 1,468,330 - Dshi_1414 0.46 -0.6 1,468,397 - Dshi_1414 0.53 +2.0 1,468,443 + Dshi_1414 0.57 +3.2 1,468,451 - Dshi_1414 0.58 -0.0 1,468,460 + Dshi_1414 0.59 -2.2 1,468,616 + Dshi_1414 0.74 -0.6 1,468,626 + Dshi_1414 0.75 +0.2 1,468,665 - Dshi_1414 0.79 +0.6 1,468,750 - Dshi_1414 0.87 -0.3
Or see this region's nucleotide sequence