Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1375

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1374 and Dshi_1375 are separated by 341 nucleotidesDshi_1375 and Dshi_1376 are separated by 56 nucleotidesDshi_1376 and Dshi_1377 overlap by 8 nucleotides Dshi_1374: Dshi_1374 - NMT1/THI5 like domain protein (RefSeq), at 1,427,332 to 1,428,321 _1374 Dshi_1375: Dshi_1375 - Ornithine decarboxylase (RefSeq), at 1,428,663 to 1,429,859 _1375 Dshi_1376: Dshi_1376 - Creatininase (RefSeq), at 1,429,916 to 1,430,713 _1376 Dshi_1377: Dshi_1377 - 2OG-Fe(II) oxygenase (RefSeq), at 1,430,706 to 1,431,608 _1377 Position (kb) 1428 1429 1430Strain fitness (log2 ratio) -2 -1 0 1 2at 1427.674 kb on - strand, within Dshi_1374at 1427.805 kb on + strand, within Dshi_1374at 1427.919 kb on - strand, within Dshi_1374at 1428.013 kb on + strand, within Dshi_1374at 1428.073 kb on + strand, within Dshi_1374at 1428.075 kb on + strand, within Dshi_1374at 1428.310 kb on + strandat 1428.310 kb on + strandat 1428.434 kb on + strandat 1428.466 kb on - strandat 1429.153 kb on - strand, within Dshi_1375at 1429.231 kb on + strand, within Dshi_1375at 1429.648 kb on + strand, within Dshi_1375at 1429.954 kb on - strandat 1430.128 kb on + strand, within Dshi_1376at 1430.169 kb on + strand, within Dshi_1376at 1430.172 kb on - strand, within Dshi_1376

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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1,427,674 - Dshi_1374 0.35 +0.8
1,427,805 + Dshi_1374 0.48 -1.2
1,427,919 - Dshi_1374 0.59 -0.8
1,428,013 + Dshi_1374 0.69 +1.2
1,428,073 + Dshi_1374 0.75 -1.1
1,428,075 + Dshi_1374 0.75 +0.4
1,428,310 + -0.4
1,428,310 + -1.2
1,428,434 + +2.0
1,428,466 - +0.6
1,429,153 - Dshi_1375 0.41 -0.2
1,429,231 + Dshi_1375 0.47 -2.1
1,429,648 + Dshi_1375 0.82 -0.8
1,429,954 - +2.0
1,430,128 + Dshi_1376 0.27 +1.4
1,430,169 + Dshi_1376 0.32 -2.2
1,430,172 - Dshi_1376 0.32 -1.4

Or see this region's nucleotide sequence