Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1222

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1221 and Dshi_1222 are separated by 330 nucleotidesDshi_1222 and Dshi_1223 are separated by 25 nucleotides Dshi_1221: Dshi_1221 - transcriptional regulator, XRE family (RefSeq), at 1,261,791 to 1,263,197 _1221 Dshi_1222: Dshi_1222 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,263,528 to 1,264,271 _1222 Dshi_1223: Dshi_1223 - aminopeptidase N (RefSeq), at 1,264,297 to 1,266,852 _1223 Position (kb) 1263 1264 1265Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1262.569 kb on + strand, within Dshi_1221at 1262.572 kb on + strand, within Dshi_1221at 1262.627 kb on - strand, within Dshi_1221at 1262.699 kb on + strand, within Dshi_1221at 1262.795 kb on + strand, within Dshi_1221at 1262.833 kb on + strand, within Dshi_1221at 1262.855 kb on + strand, within Dshi_1221at 1263.048 kb on - strand, within Dshi_1221at 1263.055 kb on + strand, within Dshi_1221at 1263.112 kb on + strandat 1263.113 kb on - strandat 1263.113 kb on - strandat 1263.113 kb on - strandat 1263.113 kb on - strandat 1263.262 kb on + strandat 1264.029 kb on + strand, within Dshi_1222at 1264.344 kb on + strandat 1264.356 kb on + strandat 1264.450 kb on + strandat 1264.503 kb on - strandat 1264.610 kb on - strand, within Dshi_1223at 1264.653 kb on + strand, within Dshi_1223at 1264.653 kb on + strand, within Dshi_1223at 1264.790 kb on + strand, within Dshi_1223at 1264.899 kb on - strand, within Dshi_1223at 1264.974 kb on - strand, within Dshi_1223at 1265.034 kb on + strand, within Dshi_1223at 1265.172 kb on + strand, within Dshi_1223

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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1,262,569 + Dshi_1221 0.55 -0.1
1,262,572 + Dshi_1221 0.56 -1.6
1,262,627 - Dshi_1221 0.59 -0.7
1,262,699 + Dshi_1221 0.65 +3.4
1,262,795 + Dshi_1221 0.71 -1.4
1,262,833 + Dshi_1221 0.74 +1.4
1,262,855 + Dshi_1221 0.76 +0.1
1,263,048 - Dshi_1221 0.89 +0.8
1,263,055 + Dshi_1221 0.90 -0.3
1,263,112 + +0.5
1,263,113 - +0.0
1,263,113 - -0.6
1,263,113 - +2.0
1,263,113 - -2.6
1,263,262 + +1.4
1,264,029 + Dshi_1222 0.67 -1.1
1,264,344 + -1.1
1,264,356 + -2.0
1,264,450 + -1.1
1,264,503 - +0.1
1,264,610 - Dshi_1223 0.12 -1.3
1,264,653 + Dshi_1223 0.14 -0.8
1,264,653 + Dshi_1223 0.14 -1.1
1,264,790 + Dshi_1223 0.19 -0.2
1,264,899 - Dshi_1223 0.24 +3.0
1,264,974 - Dshi_1223 0.26 -1.6
1,265,034 + Dshi_1223 0.29 +0.4
1,265,172 + Dshi_1223 0.34 +0.6

Or see this region's nucleotide sequence