Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1222
Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Tetracycline 0.006 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,262,569 | + | Dshi_1221 | 0.55 | -0.1 | |
1,262,572 | + | Dshi_1221 | 0.56 | -1.6 | |
1,262,627 | - | Dshi_1221 | 0.59 | -0.7 | |
1,262,699 | + | Dshi_1221 | 0.65 | +3.4 | |
1,262,795 | + | Dshi_1221 | 0.71 | -1.4 | |
1,262,833 | + | Dshi_1221 | 0.74 | +1.4 | |
1,262,855 | + | Dshi_1221 | 0.76 | +0.1 | |
1,263,048 | - | Dshi_1221 | 0.89 | +0.8 | |
1,263,055 | + | Dshi_1221 | 0.90 | -0.3 | |
1,263,112 | + | +0.5 | |||
1,263,113 | - | +0.0 | |||
1,263,113 | - | -0.6 | |||
1,263,113 | - | +2.0 | |||
1,263,113 | - | -2.6 | |||
1,263,262 | + | +1.4 | |||
1,264,029 | + | Dshi_1222 | 0.67 | -1.1 | |
1,264,344 | + | -1.1 | |||
1,264,356 | + | -2.0 | |||
1,264,450 | + | -1.1 | |||
1,264,503 | - | +0.1 | |||
1,264,610 | - | Dshi_1223 | 0.12 | -1.3 | |
1,264,653 | + | Dshi_1223 | 0.14 | -0.8 | |
1,264,653 | + | Dshi_1223 | 0.14 | -1.1 | |
1,264,790 | + | Dshi_1223 | 0.19 | -0.2 | |
1,264,899 | - | Dshi_1223 | 0.24 | +3.0 | |
1,264,974 | - | Dshi_1223 | 0.26 | -1.6 | |
1,265,034 | + | Dshi_1223 | 0.29 | +0.4 | |
1,265,172 | + | Dshi_1223 | 0.34 | +0.6 |
Or see this region's nucleotide sequence