Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1185

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1184 and Dshi_1185 are separated by 166 nucleotidesDshi_1185 and Dshi_1186 are separated by 1 nucleotidesDshi_1186 and Dshi_1187 overlap by 4 nucleotides Dshi_1184: Dshi_1184 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (RefSeq), at 1,219,665 to 1,220,816 _1184 Dshi_1185: Dshi_1185 - dimethyladenosine transferase (RefSeq), at 1,220,983 to 1,221,825 _1185 Dshi_1186: Dshi_1186 - 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq), at 1,221,827 to 1,222,810 _1186 Dshi_1187: Dshi_1187 - SurA domain (RefSeq), at 1,222,807 to 1,224,003 _1187 Position (kb) 1220 1221 1222Strain fitness (log2 ratio) -2 -1 0 1at 1220.811 kb on + strandat 1221.109 kb on - strand, within Dshi_1185at 1221.155 kb on + strand, within Dshi_1185at 1221.168 kb on - strand, within Dshi_1185at 1221.281 kb on + strand, within Dshi_1185at 1221.797 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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1,220,811 + -2.4
1,221,109 - Dshi_1185 0.15 -1.1
1,221,155 + Dshi_1185 0.20 +1.4
1,221,168 - Dshi_1185 0.22 -1.5
1,221,281 + Dshi_1185 0.35 -0.1
1,221,797 - +0.0

Or see this region's nucleotide sequence