Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1066 and Dshi_1067 are separated by 278 nucleotides Dshi_1067 and Dshi_1068 are separated by 79 nucleotides Dshi_1068 and Dshi_1069 are separated by 61 nucleotides Dshi_1069 and Dshi_1070 are separated by 187 nucleotides
Dshi_1066: Dshi_1066 - hypothetical protein (RefSeq), at 1,098,458 to 1,098,886
_1066
Dshi_1067: Dshi_1067 - Superoxide dismutase (RefSeq), at 1,099,165 to 1,099,764
_1067
Dshi_1068: Dshi_1068 - hypothetical protein (RefSeq), at 1,099,844 to 1,100,293
_1068
Dshi_1069: Dshi_1069 - Fe-S metabolism associated SufE (RefSeq), at 1,100,355 to 1,100,849
_1069
Dshi_1070: Dshi_1070 - hypothetical protein (RefSeq), at 1,101,037 to 1,101,669
_1070
Position (kb)
1099
1100
1101 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1098.912 kb on + strand at 1098.978 kb on - strand at 1099.081 kb on + strand at 1099.138 kb on + strand at 1099.149 kb on + strand at 1099.260 kb on + strand, within Dshi_1067 at 1099.484 kb on - strand, within Dshi_1067 at 1099.561 kb on - strand, within Dshi_1067 at 1099.561 kb on - strand, within Dshi_1067 at 1099.562 kb on - strand, within Dshi_1067 at 1099.583 kb on + strand, within Dshi_1067 at 1099.588 kb on - strand, within Dshi_1067 at 1099.761 kb on + strand at 1100.027 kb on - strand, within Dshi_1068 at 1100.058 kb on - strand, within Dshi_1068 at 1100.181 kb on + strand, within Dshi_1068 at 1100.189 kb on - strand, within Dshi_1068 at 1100.366 kb on + strand at 1100.399 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 1,098,912 + -2.3 1,098,978 - +0.4 1,099,081 + -0.2 1,099,138 + +0.4 1,099,149 + -0.1 1,099,260 + Dshi_1067 0.16 +0.4 1,099,484 - Dshi_1067 0.53 -0.4 1,099,561 - Dshi_1067 0.66 -2.5 1,099,561 - Dshi_1067 0.66 -2.4 1,099,562 - Dshi_1067 0.66 -0.1 1,099,583 + Dshi_1067 0.70 -0.4 1,099,588 - Dshi_1067 0.70 -1.8 1,099,761 + -1.9 1,100,027 - Dshi_1068 0.41 +0.7 1,100,058 - Dshi_1068 0.48 +2.7 1,100,181 + Dshi_1068 0.75 +0.5 1,100,189 - Dshi_1068 0.77 -1.6 1,100,366 + -0.6 1,100,399 - -1.4
Or see this region's nucleotide sequence