Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1063 and Dshi_1064 overlap by 8 nucleotides Dshi_1064 and Dshi_1065 are separated by 379 nucleotides Dshi_1065 and Dshi_1066 are separated by 81 nucleotides Dshi_1066 and Dshi_1067 are separated by 278 nucleotides
Dshi_1063: Dshi_1063 - protein of unknown function DUF1289 (RefSeq), at 1,097,007 to 1,097,243
_1063
Dshi_1064: Dshi_1064 - Holliday junction resolvase YqgF (RefSeq), at 1,097,236 to 1,097,727
_1064
Dshi_1065: Dshi_1065 - hypothetical protein (RefSeq), at 1,098,107 to 1,098,376
_1065
Dshi_1066: Dshi_1066 - hypothetical protein (RefSeq), at 1,098,458 to 1,098,886
_1066
Dshi_1067: Dshi_1067 - Superoxide dismutase (RefSeq), at 1,099,165 to 1,099,764
_1067
Position (kb)
1098
1099 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1097.190 kb on + strand, within Dshi_1063 at 1097.193 kb on - strand, within Dshi_1063 at 1097.231 kb on + strand at 1097.231 kb on - strand at 1097.822 kb on - strand at 1097.896 kb on + strand at 1097.913 kb on - strand at 1098.012 kb on + strand at 1098.014 kb on + strand at 1098.091 kb on + strand at 1098.096 kb on - strand at 1098.098 kb on - strand at 1098.123 kb on + strand at 1098.133 kb on + strand at 1098.141 kb on - strand, within Dshi_1065 at 1098.194 kb on + strand, within Dshi_1065 at 1098.247 kb on - strand, within Dshi_1065 at 1098.350 kb on + strand at 1098.500 kb on + strand at 1098.540 kb on + strand, within Dshi_1066 at 1098.548 kb on - strand, within Dshi_1066 at 1098.563 kb on - strand, within Dshi_1066 at 1098.563 kb on - strand, within Dshi_1066 at 1098.605 kb on - strand, within Dshi_1066 at 1098.656 kb on + strand, within Dshi_1066 at 1098.912 kb on + strand at 1098.978 kb on - strand at 1099.081 kb on + strand at 1099.138 kb on + strand at 1099.149 kb on + strand at 1099.260 kb on + strand, within Dshi_1067
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 1,097,190 + Dshi_1063 0.77 -2.2 1,097,193 - Dshi_1063 0.78 +0.4 1,097,231 + +0.4 1,097,231 - -0.6 1,097,822 - +0.4 1,097,896 + -2.7 1,097,913 - -0.6 1,098,012 + +0.4 1,098,014 + -2.4 1,098,091 + +0.7 1,098,096 - -0.9 1,098,098 - -1.5 1,098,123 + +0.4 1,098,133 + +2.0 1,098,141 - Dshi_1065 0.13 -3.4 1,098,194 + Dshi_1065 0.32 +1.4 1,098,247 - Dshi_1065 0.52 +1.8 1,098,350 + +0.0 1,098,500 + -1.7 1,098,540 + Dshi_1066 0.19 +0.4 1,098,548 - Dshi_1066 0.21 -2.2 1,098,563 - Dshi_1066 0.24 -1.2 1,098,563 - Dshi_1066 0.24 -1.2 1,098,605 - Dshi_1066 0.34 -3.1 1,098,656 + Dshi_1066 0.46 -0.9 1,098,912 + -2.3 1,098,978 - +0.4 1,099,081 + -0.2 1,099,138 + +0.4 1,099,149 + -0.1 1,099,260 + Dshi_1067 0.16 +0.4
Or see this region's nucleotide sequence